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SCNpilot_expt_500_bf_scaffold_15512

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_15512_1
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..412
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000376CEBA
Uncharacterized protein {ECO:0000313|EMBL:KJC41802.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein; K09807 hypothetical protein
SCNpilot_expt_500_bf_scaffold_15512_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(539..913)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5D2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34875.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
metallo-hydrolase/oxidoreductase
SCNpilot_expt_500_bf_scaffold_15512_3
Plasmodium yoelii, Plasmodium, Haemosporida, Aconoidasida, Apicomplexa, Eukaryota

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comp(1687..1980)
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:EAA20197.1}; Flags: Fragment;; TaxID=73239 species="Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Vinckeia).;" source="Plasmodium yoelii yoelii.;"
SCNpilot_expt_500_bf_scaffold_15512_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2154..3431
DNA (1278bp) protein (426aa)
Signal recognition particle protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHJ0_NITHX
signal recognition particle protein; K03106 signal recognition particle subunit SRP54
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_bf_scaffold_15512_5
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3689..4237
DNA (549bp) protein (183aa)
Ribosome maturation factor RimM n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0FYJ3_9BRAD
rimM; 16S rRNA processing protein; K02860 16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_expt_500_bf_scaffold_15512_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4323..5072
DNA (750bp) protein (250aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] rbh
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VJ04_RHOPX rbh
SCNpilot_expt_500_bf_scaffold_15512_7
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5179..5529
DNA (351bp) protein (117aa)
50S ribosomal protein L19 n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=RL19_BRASO
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
50S ribosomal protein L19 {ECO:0000255|HAMAP-Rule:MF_00402}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCNpilot_expt_500_bf_scaffold_15512_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5541..5795
DNA (255bp) protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:ABD85801.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_500_bf_scaffold_15512_9
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5865..6425
DNA (561bp) protein (187aa)
isopropylmalate isomerase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase large subunit {ECO:0000255|HAMAP-Rule:MF_01026}; EC=4.2.1.33 {ECO:0000255|HAMAP-Rule:MF_01026};; Alpha-IPM isomerase {ECO:0000255|HAMAP-Rule:MF_01026}; Short=IPMI {ECO:0000255|HAMAP-Rule:MF_01026};; Isopropylmalate isomerase {ECO:0000255|HAMAP-Rule:MF_01026}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
3-isopropylmalate dehydratase large subunit n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=LEUC_NITWN
Displaying 9 items

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