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SCNpilot_expt_500_bf_scaffold_14898

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_14898_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..289)
DNA (288bp) protein (96aa)
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VI36_RHOPX
SCNpilot_expt_500_bf_scaffold_14898_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(282..869)
DNA (588bp) protein (196aa)
NADPH-dependent FMN reductase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21CH9_RHOPB
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ABD85907.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_500_bf_scaffold_14898_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(921..1307)
DNA (387bp) protein (129aa)
Ribosomal RNA adenine methylase transferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRT9_NITHX
ribosomal RNA adenine methylase transferase
Ribosomal RNA adenine methylase transferase {ECO:0000313|EMBL:ABE61058.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_bf_scaffold_14898_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1565..1879)
DNA (315bp) protein (105aa)
Chaperone protein DnaJ n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=DNAJ_RHOPB
chaperone protein DnaJ; K03686 molecular chaperone DnaJ
Chaperone protein DnaJ {ECO:0000255|HAMAP-Rule:MF_01152}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_500_bf_scaffold_14898_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2810..4354)
DNA (1545bp) protein (515aa)
Chaperone protein DnaK n=2 Tax=Oligotropha carboxidovorans RepID=DNAK_OLICO
dnaK; chaperone protein DnaK; K04043 molecular chaperone DnaK
Chaperone protein DnaK {ECO:0000255|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000255|HAMAP-Rule:MF_00332}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_14898_6
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5055..5999
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TIS8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CCE06366.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
conserved exported hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_14898_7
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6027..6374)
DNA (348bp) protein (116aa)
Protein GrpE n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SUX4_9BRAD
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
grpE; heat shock protein GrpE; K03687 molecular chaperone GrpE
SCNpilot_expt_500_bf_scaffold_14898_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6664..7752)
DNA (1089bp) protein (363aa)
Heat-inducible transcription repressor HrcA n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=HRCA_RHOP2 rbh
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor rbh
Heat-inducible transcription repressor HrcA {ECO:0000255|HAMAP-Rule:MF_00081}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_500_bf_scaffold_14898_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7906..8592
DNA (687bp) protein (229aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
rph; ribonuclease PH; K00989 ribonuclease PH [EC:2.7.7.56]
Ribonuclease PH n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=RNPH_RHOPB
SCNpilot_expt_500_bf_scaffold_14898_10
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8645..9280
DNA (636bp) protein (212aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; B
nucleoside-triphosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] rbh
nucleoside-triphosphate diphosphatase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037DBAE6 rbh
Displaying 10 items

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