ggKbase home page

SCNpilot_expt_500_bf_scaffold_4904

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4904_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..222)
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q131H7_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE41262.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_500_bf_scaffold_4904_2
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

452..922
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QHG9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EIG59225.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4904_3
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

990..1682
DNA (693bp) protein (231aa)
Icc protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H0G1_9BRAD rbh
Bradyrhizobium elkanii strain UASWS1015 Contig174, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49306.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ribonuclease T2 rbh
SCNpilot_expt_500_bf_scaffold_4904_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1742..2602
DNA (861bp) protein (287aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBC9_9BRAD rbh
hypothetical protein; K07115 rbh
SCNpilot_expt_500_bf_scaffold_4904_5
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2913..3170
DNA (258bp) protein (86aa)
Cold shock protein (Beta-ribbon, CspA family) n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IHK7_9BRAD
Cold shock protein (Beta-ribbon, CspA family) {ECO:0000313|EMBL:ERF83205.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
DNA binding cold shock protein
SCNpilot_expt_500_bf_scaffold_4904_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3161..3790)
DNA (630bp) protein (210aa)
Putative outer-membrane immunogenic protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIR4_NITHX rbh
Membrane protein {ECO:0000313|EMBL:KIZ40175.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
outer-membrane immunogenic protein precursor rbh
SCNpilot_expt_500_bf_scaffold_4904_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4041..6137
DNA (2097bp) protein (699aa)
UvrABC system protein C n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QFB9_9BRAD rbh
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C rbh
SCNpilot_expt_500_bf_scaffold_4904_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6801..7010
DNA (210bp) protein (70aa)
Molybdopterin converting factor, subunit 1 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NK28_AFIFE
Molybdopterin synthase sulfur carrier subunit {ECO:0000256|RuleBase:RU362014}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
molybdopterin converting factor subunit 1; K03636 molybdopterin synthase sulfur carrier subunit
SCNpilot_expt_500_bf_scaffold_4904_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7073..7540
DNA (468bp) protein (156aa)
molybdopterin biosynthesis MoaE; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-]
Molybdopterin synthase subunit MoaE n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIR8_NITHX
Molybdopterin synthase subunit MoaE {ECO:0000313|EMBL:ABE63879.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_bf_scaffold_4904_10
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7540..8520
DNA (981bp) protein (327aa)
hypothetical adenine-specific methylase; K07320 putative adenine-specific DNA-methyltransferase [EC:2.1.1.72] rbh
Protein-(Glutamine-N5) methyltransferase, ribosomal protein L3-specific n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEV3_9BRAD
Adenine-specific methylase {ECO:0000313|EMBL:AHY54580.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCNpilot_expt_500_bf_scaffold_4904_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8738..10135
DNA (1398bp) protein (466aa)
MATE efflux family protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIS0_NITHX rbh
MATE efflux family protein; K03327 multidrug resistance protein, MATE family rbh
MATE efflux family protein {ECO:0000313|EMBL:ABE63877.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_bf_scaffold_4904_12
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10200..11312)
DNA (1113bp) protein (371aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] rbh
branched-chain amino acid aminotransferase n=1 Tax=Afipia birgiae RepID=UPI00035F7141
SCNpilot_expt_500_bf_scaffold_4904_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11599..12144
DNA (546bp) protein (182aa)
Transcriptional regulator, MarR family n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2ISE4_RHOP2
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABD08866.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_500_bf_scaffold_4904_14
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12146..12610
DNA (465bp) protein (155aa)
chemotaxis protein CheY n=1 Tax=Bradyrhizobium elkanii RepID=UPI000381E185
Bradyrhizobium elkanii strain UASWS1015 Contig174, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49160.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
two-component response regulator; K07659 two-component system, OmpR family, phosphate regulon response regulator OmpR
SCNpilot_expt_500_bf_scaffold_4904_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12601..12825
DNA (225bp) protein (75aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q219I8_RHOPB
two component transcriptional regulator; K07659 two-component system, OmpR family, phosphate regulon response regulator OmpR
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABD86948.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_500_bf_scaffold_4904_16
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13562..14206
DNA (645bp) protein (215aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
sensor signal transduction histidine kinase; K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
Signal transduction histidine kinase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WY28_9BRAD
SCNpilot_expt_500_bf_scaffold_4904_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14427..15263)
DNA (837bp) protein (279aa)
pyrroline-5-carboxylate reductase (EC:1.5.1.2); K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2] rbh
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Pyrroline-5-carboxylate reductase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIV4_NITHX rbh
SCNpilot_expt_500_bf_scaffold_4904_18
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15453..15737)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIV5_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63842.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying 18 items

View Taxonomy