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SCNpilot_expt_500_bf_scaffold_13990

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_13990_1
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..961
DNA (960bp) protein (320aa)
Uncharacterized protein DUF1446 n=1 Tax=Rhodovulum sp. PH10 RepID=J6JFX9_9RHOB
Uncharacterized protein DUF1446 {ECO:0000313|EMBL:EJW13595.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_13990_2
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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961..1287
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZC27_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM91006.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_500_bf_scaffold_13990_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1338..2657
DNA (1320bp) protein (440aa)
amidase (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] rbh
Amidase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJX8_NITHX rbh
Amidase {ECO:0000313|EMBL:ABE63469.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_bf_scaffold_13990_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2682..3134
DNA (453bp) protein (151aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q139X2_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE39117.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_500_bf_scaffold_13990_5
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3091..3339
DNA (249bp) protein (83aa)
Aldehyde dehydrogenase (NAD+) n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IFE9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC54377.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_13990_6
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3364..3567)
DNA (204bp) protein (68aa)
Putative 2-oxohepta-3-ene-1,7-dioic acid hydratase (Catechol pathway), bifunctional protein isomerase/decarboxylase hpcE-like {ECO:0000313|EMBL:CCE06548.1}; EC=4.1.1.68 {ECO:0000313|EMBL:CCE06548.1};; EC=5.3.3.10 {ECO:0000313|EMBL:CCE06548.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC:4.1.1.68 5.3.3.10)
Putative 2-oxohepta-3-ene-1,7-dioic acid hydratase (Catechol pathway), bifunctional protein isomerase/decarboxylase hpcE-like n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TJB0_9BRAD
SCNpilot_expt_500_bf_scaffold_13990_7
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3564..4211)
DNA (648bp) protein (216aa)
Putative 2-oxohepta-3-ene-1,7-dioic acid hydratase (Catechol pathway), bifunctional protein isomerase/decarboxylase hpcE-like {ECO:0000313|EMBL:CCD91962.1}; EC=4.1.1.68 {ECO:0000313|EMBL:CCD91962.1};; EC=5.3.3.10 {ECO:0000313|EMBL:CCD91962.1};; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC:4.1.1.68 5.3.3.10)
Putative 2-oxohepta-3-ene-1,7-dioic acid hydratase (Catechol pathway), bifunctional protein isomerase/decarboxylase hpcE-like n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SCN5_9BRAD
SCNpilot_expt_500_bf_scaffold_13990_8
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4252..4575)
DNA (324bp) protein (108aa)
Putative metapyrocatechase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GBV1_9BRAD
putative metapyrocatechase
Putative metapyrocatechase {ECO:0000313|EMBL:BAL78238.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_expt_500_bf_scaffold_13990_9
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4572..5207)
DNA (636bp) protein (212aa)
metapyrocatechase (EC:1.13.11.2); K00446 catechol 2,3-dioxygenase [EC:1.13.11.2]
3,4-dihydroxyphenylacetate 2,3-dioxygenase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YII4_9BRAD
3,4-dihydroxyphenylacetate 2,3-dioxygenase {ECO:0000313|EMBL:KJC49354.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_expt_500_bf_scaffold_13990_10
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5283..5681)
DNA (399bp) protein (133aa)
hpcD; 5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10); K01826 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
5-carboxymethyl-2-hydroxymuconate isomerase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YII6_9BRAD
5-carboxymethyl-2-hydroxymuconate isomerase {ECO:0000313|EMBL:EHR02131.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCNpilot_expt_500_bf_scaffold_13990_11
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5715..5978)
DNA (264bp) protein (88aa)
hpcG; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; K02509 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3HVV3_9BRAD
2-oxo-hepta-3-ene-1,7-dioate hydratase {ECO:0000313|EMBL:KJC49357.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_expt_500_bf_scaffold_13990_12
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6136..6573
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae DSM 30104 RepID=J2DPT6_KLEPN
AraC family regulatory protein {ECO:0000313|EMBL:CDL46834.1}; TaxID=1432558 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae ISC21.;"
AraC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_13990_13
unknown

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6646..6774
DNA (129bp) protein (43aa)

This feature has no annotations

Displaying 13 items

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