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SCNpilot_expt_500_bf_scaffold_2633

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2633_1
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..541
DNA (540bp) protein (180aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H691_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig167, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51078.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_expt_500_bf_scaffold_2633_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(625..1269)
DNA (645bp) protein (215aa)
UPF0301 protein RPC_0788 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Y788_RHOPB rbh
hypothetical protein; K07735 putative transcriptional regulator rbh
UPF0301 protein RPC_0788 {ECO:0000255|HAMAP-Rule:MF_00758}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_500_bf_scaffold_2633_3
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1406..2245
DNA (840bp) protein (280aa)
protein involved in C cytochrome biogenesis n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036CA6DB rbh
Cytochrome C biogenesis protein {ECO:0000313|EMBL:KJC54543.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
conserved exported hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2633_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2336..2989
DNA (654bp) protein (218aa)
Polysaccharide biosynthesis protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHL5_NITHX
polysaccharide biosynthesis protein
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:ABE64282.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_bf_scaffold_2633_5
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2965..3678
DNA (714bp) protein (238aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I1W7_9BRAD
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:EJN12443.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2633_6
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3857..4645)
DNA (789bp) protein (263aa)
3-hydroxybutyrate dehydrogenase; K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] rbh
3-hydroxybutyrate dehydrogenase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NU00_9BRAD
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:EKS32631.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_500_bf_scaffold_2633_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4647..5846)
DNA (1200bp) protein (400aa)
Patatin n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHL3_NITHX rbh
patatin; K07001 NTE family protein rbh
Patatin {ECO:0000313|EMBL:ABE64284.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_bf_scaffold_2633_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5933..6451)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00035D9657
Uncharacterized protein {ECO:0000313|EMBL:EKS34075.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2633_9
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6540..7580)
DNA (1041bp) protein (347aa)
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701};; Sulfate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01701}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
sulfate transporter permease (EC:3.6.3.25); K02045 sulfate transport system ATP-binding protein [EC:3.6.3.25] rbh
Sulphate transport system permease protein 1 n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WTL1_9BRAD rbh
SCNpilot_expt_500_bf_scaffold_2633_10
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7570..8439)
DNA (870bp) protein (290aa)
sulfate/thiosulfate transporter permease subunit n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003757A0A rbh
CysW protein {ECO:0000313|EMBL:KIU52491.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
sulfate ABC transporter permease; K02047 sulfate transport system permease protein
SCNpilot_expt_500_bf_scaffold_2633_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8452..9288)
DNA (837bp) protein (279aa)
Sulfate ABC transporter, permease protein CysT n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHK9_NITHX rbh
sulfate ABC transporter permease; K02046 sulfate transport system permease protein rbh
Sulfate ABC transporter, permease protein CysT {ECO:0000313|EMBL:ABE64288.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_bf_scaffold_2633_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9318..10307)
DNA (990bp) protein (330aa)
Thiosulphate-binding protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHK8_NITHX rbh
thiosulfate-binding protein; K02048 sulfate transport system substrate-binding protein rbh
Thiosulphate-binding protein {ECO:0000313|EMBL:ABE64289.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_bf_scaffold_2633_13
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10426..11160)
DNA (735bp) protein (245aa)
phosphoadenosine phosphosulfate reductase (EC:1.8.4.8); K00390 phosphoadenosine phosphosulfate reductase [EC:1.8.4.8] rbh
phosphoadenosine phosphosulfate reductase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00037DF759 rbh
Phosphoadenosine phosphosulfate reductase {ECO:0000313|EMBL:KJC39343.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_expt_500_bf_scaffold_2633_14
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11157..11441)
DNA (285bp) protein (95aa)
cysG; uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107); K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
siroheme synthase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003475A43
Siroheme synthase {ECO:0000313|EMBL:KJC39339.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_expt_500_bf_scaffold_2633_15
Siccibacter turicensis, Siccibacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12070..12480
DNA (411bp) protein (137aa)
Uncharacterized protein {ECO:0000313|EMBL:CCJ89637.1}; TaxID=1208590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Siccibacter.;" source="Siccibacter turicensis 564.;"
SCNpilot_expt_500_bf_scaffold_2633_16
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12793..13587
DNA (795bp) protein (265aa)
sulfate adenylyltransferase subunit 2 (EC:2.7.7.4); K00957 sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] rbh
Sulfate adenylyltransferase subunit 2 n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13BZ7_RHOPS rbh
Sulfate adenylyltransferase {ECO:0000313|EMBL:ETR77415.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
Displaying 16 items

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