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SCNpilot_expt_500_bf_scaffold_8052

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_8052_1
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..385)
DNA (384bp) protein (128aa)
Cytochrome c, class I n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11EA8_MESSB
Cytochrome C {ECO:0000313|EMBL:KFI31334.1}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massiliensis.;"
cytochrome c, class I
SCNpilot_expt_500_bf_scaffold_8052_2
unknown

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comp(578..715)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8052_3
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(679..1311)
DNA (633bp) protein (211aa)
Amino acid ABC transporter substrate-binding protein, PAAT family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11EA7_MESSB
Extracellular solute-binding protein, family 3 {ECO:0000313|EMBL:KFC61281.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
extracellular solute-binding protein
SCNpilot_expt_500_bf_scaffold_8052_4

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1553..1909
DNA (357bp) protein (119aa)
Marine sediment metagenome DNA, contig: S03H2_L08422 {ECO:0000313|EMBL:GAH37390.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_500_bf_scaffold_8052_5
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2103..2873)
DNA (771bp) protein (257aa)
Daunorubicin resistance ABC transporter ATPase subunit n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11EA5_MESSB rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KFC61279.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
daunorubicin resistance ABC transporter ATPase subunit; K09687 antibiotic transport system ATP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_8052_6
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3297..4385
DNA (1089bp) protein (363aa)
Multimeric flavodoxin WrbA n=1 Tax=Microvirga sp. WSM3557 RepID=I4YV06_9RHIZ rbh
Multimeric flavodoxin WrbA {ECO:0000313|EMBL:EIM27798.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
NADPH-dependent FMN reductase rbh
SCNpilot_expt_500_bf_scaffold_8052_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4541..4900)
DNA (360bp) protein (120aa)
Two-component response regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMS6_AGRRK
two-component response regulator protein
Transcriptional regulator {ECO:0000313|EMBL:KEA03620.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_500_bf_scaffold_8052_8
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4905..6869)
DNA (1965bp) protein (655aa)
PAS domain S-box protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A8C7_9PROT
Bradyrhizobium elkanii strain UASWS1015 Contig187, whole genome shotgun sequence {ECO:0000313|EMBL:KIU43569.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
signal transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_8052_9
unknown

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comp(6904..7128)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8052_10
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7417..8067
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5C1A3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKC31831.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8052_11
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8079..8735
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI0003773C8F
Uncharacterized protein {ECO:0000313|EMBL:KKC31666.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8052_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8800..9093)
DNA (294bp) protein (98aa)
UPI0003CFAF21 related cluster n=1 Tax=unknown RepID=UPI0003CFAF21
Uncharacterized protein {ECO:0000313|EMBL:KKB86706.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8052_13
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9053..9451)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B8M1_RHILS
Uncharacterized protein {ECO:0000313|EMBL:KKB86706.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8052_14
unknown

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comp(9500..10255)
DNA (756bp) protein (252aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8052_15

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comp(10555..11214)
DNA (660bp) protein (220aa)
sterol 3-beta-glucosyltransferase (EC:2.4.1.173)
Putative uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=E4WME3_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:CBI71189.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 15 items

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