ggKbase home page

SCNpilot_expt_500_bf_scaffold_8818

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_8818_1
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..618
DNA (618bp) protein (206aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VP27_RHOPX
Conserved protein {ECO:0000313|EMBL:GAK43766.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8818_2
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

685..1449
DNA (765bp) protein (255aa)
Trans-aconitate 2-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147}; EC=2.1.1.144 {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
trans-aconitate 2-methyltransferase (EC:2.1.1.144); K00598 trans-aconitate 2-methyltransferase [EC:2.1.1.144]
Trans-aconitate 2-methyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=TAM_NITHX
SCNpilot_expt_500_bf_scaffold_8818_3

Not on your lists

1542..2192
DNA (651bp) protein (217aa)
hypothetical protein; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QKT8_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KKN61899.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_500_bf_scaffold_8818_4
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2197..2601)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000373B47D
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EPE95326.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_500_bf_scaffold_8818_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3241..3546
DNA (306bp) protein (102aa)
Beta-ketoadipate enol-lactone hydrolase {ECO:0000313|EMBL:CDP50836.1}; EC=3.1.1.24 {ECO:0000313|EMBL:CDP50836.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Alpha/beta hydrolase fold protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG13_PELHB
alpha/beta hydrolase
SCNpilot_expt_500_bf_scaffold_8818_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3781..4785)
DNA (1005bp) protein (335aa)
ftrA; transcriptional activator FtrA (EC:1.6.99.3); K13633 AraC family transcriptional regulator, transcriptional activator FtrA rbh
Putative transcriptional regulator protein, AraC family n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A7Q0_RHIET rbh
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:AHK44782.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_500_bf_scaffold_8818_7
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4807..5241
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036830F8
hypothetical protein
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_500_bf_scaffold_8818_8
unknown

Not on your lists

5330..5842
DNA (513bp) protein (171aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8818_9
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5898..6347)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JDR6_HYPSM
Uncharacterized protein {ECO:0000313|EMBL:KKB84942.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8818_10
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6518..7426
DNA (909bp) protein (303aa)
Protein rarD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG12_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC34722.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
protein rarD; K05786 chloramphenicol-sensitive protein RarD
SCNpilot_expt_500_bf_scaffold_8818_11
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7423..8004
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YM33_MOBAS
Uncharacterized protein {ECO:0000313|EMBL:EAS51548.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
MOSC domain-containing protein
SCNpilot_expt_500_bf_scaffold_8818_12
unknown

Not on your lists

8716..9063
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8818_13
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9221..9418
DNA (198bp) protein (66aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
catalase/peroxidase; K03782 catalase-peroxidase [EC:1.11.1.21]
catalase/hydroperoxidase HPI(I) n=1 Tax=Ruegeria conchae RepID=UPI00023787FC
Displaying 13 items

View Taxonomy