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SCNpilot_expt_500_bf_scaffold_5006

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5006_1
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..438)
DNA (438bp) protein (146aa)
Tetracycline resistance protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDJ5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL28687.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
tetracycline resistance protein; K08151 MFS transporter, DHA1 family, tetracycline resistance protein
SCNpilot_expt_500_bf_scaffold_5006_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(609..1820)
DNA (1212bp) protein (404aa)
salicylate hydroxylase; K00480 salicylate hydroxylase [EC:1.14.13.1] rbh
Salicylate hydroxylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDJ4_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB84053.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_500_bf_scaffold_5006_3
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1829..2074)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003656D19
Uncharacterized protein {ECO:0000313|EMBL:KKC36615.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5006_4
unknown

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2249..2542
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5006_5
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2616..3374
DNA (759bp) protein (253aa)
Putative hydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDJ2_PELHB
Alpha/beta hydrolase {ECO:0000313|EMBL:KKB84078.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative hydrolase
SCNpilot_expt_500_bf_scaffold_5006_6
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3476..4225
DNA (750bp) protein (250aa)
serine acetyltransferase; K00640 serine O-acetyltransferase [EC:2.3.1.30]
Serine acetyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDJ1_PELHB
Serine acetyltransferase {ECO:0000313|EMBL:KKB12041.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_500_bf_scaffold_5006_7
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4408..4626
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDJ0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP50465.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5006_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4705..5376)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDI8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB09822.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5006_9
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5476..5796
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDI7_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC33624.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5006_10
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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5815..6342
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UC64_MYXSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC45445.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
SCNpilot_expt_500_bf_scaffold_5006_11
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6276..6881)
DNA (606bp) protein (202aa)
Transglutaminase family protein cysteine peptidase BTLCP n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDM5_PELHB
Transglutaminase {ECO:0000313|EMBL:KFL28680.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
transglutaminase
SCNpilot_expt_500_bf_scaffold_5006_12
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7056..7679)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDH5_PELHB
Type IV pilus assembly PilZ {ECO:0000313|EMBL:KFC64746.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5006_13
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7863..8444)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDH4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC34324.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5006_14
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8631..9383
DNA (753bp) protein (251aa)
Rhomboid family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDH3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB12036.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
rhomboid family protein
SCNpilot_expt_500_bf_scaffold_5006_15
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9380..9598
DNA (219bp) protein (73aa)
Protein SlyX homolog n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D8K2_BRAJP
Protein SlyX homolog {ECO:0000256|HAMAP-Rule:MF_00715}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein; K03745 SlyX protein
SCNpilot_expt_500_bf_scaffold_5006_16
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9610..10017)
DNA (408bp) protein (136aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
phosphoribosyl-AMP cyclohydrolase; K01496 phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDH2_PELHB
SCNpilot_expt_500_bf_scaffold_5006_17
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10049..10891)
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037FF6E8
Transcriptional regulator, AraC family {ECO:0000313|EMBL:KFC62665.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5006_18
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10961..11578)
DNA (618bp) protein (206aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
GTP cyclohydrolase I; K01495 GTP cyclohydrolase I [EC:3.5.4.16]
GTP cyclohydrolase 1 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDH1_PELHB
SCNpilot_expt_500_bf_scaffold_5006_19
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11735..12187
DNA (453bp) protein (151aa)
Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDH0_PELHB
Putative iron-sulfur cluster assembly scaffold pro tein for SUF system, SufE2 {ECO:0000313|EMBL:CDP53897.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2
SCNpilot_expt_500_bf_scaffold_5006_20
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12187..12498
DNA (312bp) protein (104aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDG9_PELHB
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein; K08998 hypothetical protein
SCNpilot_expt_500_bf_scaffold_5006_21
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12588..12848
DNA (261bp) protein (87aa)
Transglycosylase-associated protein n=128 Tax=Brucella abortus RepID=B2S5I5_BRUA1
Membrane protein {ECO:0000313|EMBL:KKB12395.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
transglycosylase-associated protein
SCNpilot_expt_500_bf_scaffold_5006_22
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12995..14968
DNA (1974bp) protein (658aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] rbh
Threonine--tRNA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDG7_PELHB rbh
SCNpilot_expt_500_bf_scaffold_5006_23
unknown

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comp(15012..15308)
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5006_24
unknown

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comp(15549..15905)
DNA (357bp) protein (119aa)

This feature has no annotations

Displaying 24 items

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