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SCNpilot_expt_500_bf_scaffold_5201

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5201_1
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..718)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCA1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB85684.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5201_2
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(817..1263)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGI3_XANP2
Putative activity regulator of membrane protease Y bbK {ECO:0000313|EMBL:CDP52841.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein; K07340 hypothetical protein
SCNpilot_expt_500_bf_scaffold_5201_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1290..2267)
DNA (978bp) protein (326aa)
Putative stomatin/prohibitin-family membrane protease subunit YbbK n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCA3_PELHB
Putative stomatin/prohibitin-family membrane prote ase subunit YbbK {ECO:0000313|EMBL:CDP52842.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative stomatin/prohibitin-family membrane protease subunit YbbK
SCNpilot_expt_500_bf_scaffold_5201_4
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2417..3280
DNA (864bp) protein (288aa)
Probable DNA repair protein SI859A1_01077 n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YEJ8_MOBAS rbh
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein; K10979 DNA end-binding protein Ku rbh
SCNpilot_expt_500_bf_scaffold_5201_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3282..5552
DNA (2271bp) protein (757aa)
ATP-dependent DNA ligase clustered with Ku protei n, LigD {ECO:0000313|EMBL:CDP52844.1}; EC=6.5.1.1 {ECO:0000313|EMBL:CDP52844.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ATP-dependent DNA ligase clustered with Ku protein, LigD; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase clustered with Ku protein, LigD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCU3_PELHB
Displaying 5 items

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