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SCNpilot_expt_500_bf_scaffold_5529

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5529_1
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..180
DNA (180bp) protein (60aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5QED1_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:KKB84402.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_5529_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(270..1394)
DNA (1125bp) protein (375aa)
two-component regulator sensor histidine kinase; K00936 [EC:2.7.3.-] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
histidine kinase n=1 Tax=Rhizobium leguminosarum RepID=UPI000380DDED rbh
SCNpilot_expt_500_bf_scaffold_5529_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1398..2186)
DNA (789bp) protein (263aa)
sigma factor sigB regulation protein rsbQ n=1 Tax=Rhizobium leguminosarum RepID=UPI00037CAC44 rbh
alpha/beta hydrolase rbh
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ACS54924.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_500_bf_scaffold_5529_4
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2349..2729
DNA (381bp) protein (127aa)
UPI0003D04987 related cluster n=1 Tax=unknown RepID=UPI0003D04987
Uncharacterized protein {ECO:0000313|EMBL:KKC33249.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
response regulator
SCNpilot_expt_500_bf_scaffold_5529_5
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2849..3640)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FI26_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ESX70057.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
WecB/TagA/CpsF family glycosyl transferase
SCNpilot_expt_500_bf_scaffold_5529_6
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3637..4998)
DNA (1362bp) protein (454aa)
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase {ECO:0000313|EMBL:CCV07351.1}; EC=1.1.1.- {ECO:0000313|EMBL:CCV07351.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
wecC; UDP-N-acetyl-D-mannosamine dehydrogenase; K02472 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.-]
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F655_9RHIZ rbh
SCNpilot_expt_500_bf_scaffold_5529_7
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4991..5644)
DNA (654bp) protein (218aa)
wecB; UDP-N-acetylglucosamine 2-epimerase (UDP-glcnac-2-epimerase) (EC:5.1.3.14); K01791 UDP-N-acetylglucosamine 2-epimerase [EC:5.1.3.14]
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FHG3_9RHIZ
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:ESX70059.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
SCNpilot_expt_500_bf_scaffold_5529_8
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6250..7710
DNA (1461bp) protein (487aa)
UPI0003CE58FC related cluster n=1 Tax=unknown RepID=UPI0003CE58FC rbh
Uncharacterized protein {ECO:0000313|EMBL:ESW84487.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5529_9
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7835..9379
DNA (1545bp) protein (515aa)
UPI0003D0012A related cluster n=1 Tax=unknown RepID=UPI0003D0012A rbh
Cell shape-determining protein {ECO:0000313|EMBL:ESZ41574.1}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
lipopolysaccharide biosynthesis protein rbh
SCNpilot_expt_500_bf_scaffold_5529_10
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9385..10521
DNA (1137bp) protein (379aa)
UPI0003CF21FF related cluster n=1 Tax=unknown RepID=UPI0003CF21FF rbh
Uncharacterized protein {ECO:0000313|EMBL:ESW84484.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
group 1 glycosyl transferase
SCNpilot_expt_500_bf_scaffold_5529_11
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10637..10837)
DNA (201bp) protein (67aa)
Uncharacterized protein n=2 Tax=Geobacter RepID=B5EAF6_GEOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACH40295.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622).;"
SCNpilot_expt_500_bf_scaffold_5529_12
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11009..11530)
DNA (522bp) protein (174aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL29394.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_bf_scaffold_5529_13
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11690..13201
DNA (1512bp) protein (504aa)
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000347D064
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase {ECO:0000313|EMBL:ACK82059.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCNpilot_expt_500_bf_scaffold_5529_14
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13220..13573
DNA (354bp) protein (118aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VE11_RHOPX
Uncharacterized protein {ECO:0000313|EMBL:ETR76235.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5529_15
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13748..14362
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11EB1_MESSB
Zn-dependent proteases {ECO:0000313|EMBL:CDP54115.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5529_16
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15319..15642)
DNA (324bp) protein (108aa)
Pyrrolo-quinoline quinone n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11EA9_MESSB
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:KFL25946.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Pyrrolo-quinoline quinone
Displaying 16 items

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