ggKbase home page

SCNpilot_expt_500_bf_scaffold_3113

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3113_1
Actinomyces sp. HPA0247, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..566
DNA (564bp) protein (188aa)
ABC transporter permease, partial n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B4732D
Uncharacterized protein {ECO:0000313|EMBL:EPD72937.1}; TaxID=1203556 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces sp. HPA0247.;"
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein
SCNpilot_expt_500_bf_scaffold_3113_2
Actinomyces sp. oral taxon 181, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

573..2156
DNA (1584bp) protein (528aa)
Uncharacterized protein id=7720336 bin=CNBR_ACT species=Actinomyces odontolyticus genus=Actinomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EKY14194.1}; TaxID=1127690 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces sp. oral taxon 181 str. F0379.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3113_3
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2278..3267)
DNA (990bp) protein (330aa)
pyridoxine 4-dehydrogenase (EC:1.1.1.65) rbh
Pyridoxine 4-dehydrogenase {ECO:0000313|EMBL:AEG06916.1}; EC=1.1.1.65 {ECO:0000313|EMBL:AEG06916.1};; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
Pyridoxine 4-dehydrogenase n=1 Tax=Sinorhizobium meliloti (strain BL225C) RepID=F6BYU8_SINMB rbh
SCNpilot_expt_500_bf_scaffold_3113_4
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3289..4338)
DNA (1050bp) protein (350aa)
zinc-dependent alcohol dehydrogenase oxidoreductase (EC:1.1.1.-); K00100 [EC:1.1.1.-] rbh
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037DDE57 rbh
Threonine dehydrogenase {ECO:0000313|EMBL:AKF04451.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
SCNpilot_expt_500_bf_scaffold_3113_5
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4377..4796)
DNA (420bp) protein (140aa)
cupin n=1 Tax=Hoeflea sp. 108 RepID=UPI00035CC533
Uncharacterized protein {ECO:0000313|EMBL:GAN79044.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_3113_6
Pseudomonas sp. GM33, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4907..5482
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037F1B47
Transcriptional regulator {ECO:0000313|EMBL:EJM41248.1}; TaxID=1144329 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM33.;"
regulatory protein LysR
SCNpilot_expt_500_bf_scaffold_3113_7
Pseudomonas viridiflava, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5555..5800
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037F1B47
Strain LMCA8 contig_48, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ30281.1}; TaxID=33069 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas viridiflava.;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_3113_8
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5972..6961
DNA (990bp) protein (330aa)
ABC-type taurine transport system, periplasmic component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y5T9_PARAH rbh
Taurine ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB79545.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
ABC-type taurine transport system, periplasmic component rbh
SCNpilot_expt_500_bf_scaffold_3113_9
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7057..7857
DNA (801bp) protein (267aa)
Taurine transporter ATP-binding subunit {ECO:0000313|EMBL:KKB79546.1}; EC=3.6.3.36 {ECO:0000313|EMBL:KKB79546.1};; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
ABC-type taurine transport system, ATPase component (EC:3.6.3.36) rbh
ABC-type taurine transport system, ATPase component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Z0W1_PARAH rbh
SCNpilot_expt_500_bf_scaffold_3113_10
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7854..8681
DNA (828bp) protein (276aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Rhizobium sp. CF142 RepID=J2L8N7_9RHIZ rbh
Taurine ABC transporter permease {ECO:0000313|EMBL:KKB79547.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
ABC-type proline/glycine betaine transport systems, permease component rbh
SCNpilot_expt_500_bf_scaffold_3113_11
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8692..9264
DNA (573bp) protein (191aa)
4-hydroxyphenylacetate 3-monooxygenase, reductase component {ECO:0000313|EMBL:CDP51461.1}; EC=1.5.1.- {ECO:0000313|EMBL:CDP51461.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Conserved protein of DIM6/NTAB family n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HTB3_9RHIZ
putative flavin reductase
SCNpilot_expt_500_bf_scaffold_3113_12
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9440..10084
DNA (645bp) protein (215aa)
Alkanesulfonate monooxygenase {ECO:0000256|HAMAP-Rule:MF_01229}; EC=1.14.14.5 {ECO:0000256|HAMAP-Rule:MF_01229};; FMNH2-dependent aliphatic sulfonate monooxygenase {ECO:0000256|HAMAP-Rule:MF_01229}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
sulfonate monooxygenase; K04091 alkanesulfonate monooxygenase [EC:1.14.14.5]
Alkanesulfonate monooxygenase 2 n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=SSUD2_RHILO
SCNpilot_expt_500_bf_scaffold_3113_13
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10077..10526
DNA (450bp) protein (150aa)
Alkanesulfonate monooxygenase {ECO:0000256|HAMAP-Rule:MF_01229}; EC=1.14.14.5 {ECO:0000256|HAMAP-Rule:MF_01229};; FMNH2-dependent aliphatic sulfonate monooxygenase {ECO:0000256|HAMAP-Rule:MF_01229}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
alkanesulfonate monooxygenase (EC:1.14.14.5); K04091 alkanesulfonate monooxygenase [EC:1.14.14.5]
UPI0003D00AC7 related cluster n=1 Tax=unknown RepID=UPI0003D00AC7
SCNpilot_expt_500_bf_scaffold_3113_14
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10832..11938)
DNA (1107bp) protein (369aa)
FAD dependent oxidoreductase (EC:1.5.3.1) rbh
FAD dependent oxidoreductase n=2 Tax=Ketogulonicigenium vulgare RepID=E3EYI7_KETVY rbh
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KKC36671.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
SCNpilot_expt_500_bf_scaffold_3113_15
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12106..12474
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2M523_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKF07243.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3113_16
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12485..13486
DNA (1002bp) protein (334aa)
Luciferase family oxidoreductase, group 1 n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQ18_9RHIZ
Alkane 1-monooxygenase {ECO:0000313|EMBL:KKC31070.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
putative oxidoreductase protein
SCNpilot_expt_500_bf_scaffold_3113_17
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13508..14848
DNA (1341bp) protein (447aa)
putative nitrilotriacetate monooxygenase component A (EC:1.14.13.-)
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VQJ1_9RHIZ
Monooxygenase {ECO:0000313|EMBL:KKC31069.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_expt_500_bf_scaffold_3113_18
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14845..15402
DNA (558bp) protein (186aa)
putative amidohydrolase; K01451 hippurate hydrolase [EC:3.5.1.32]
amidohydrolase n=1 Tax=Rhizobium leguminosarum RepID=UPI000362F957
Amidohydrolase {ECO:0000313|EMBL:KKB82409.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
SCNpilot_expt_500_bf_scaffold_3113_19
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15440..15973
DNA (534bp) protein (178aa)
hippurate hydrolase; K01451 hippurate hydrolase [EC:3.5.1.32]
Amidohydrolase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CBK2_9RHIZ
Amidohydrolase {ECO:0000313|EMBL:KKB82409.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
SCNpilot_expt_500_bf_scaffold_3113_20
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15970..16326
DNA (357bp) protein (119aa)
Acetyltransferase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JJU9_AGRRK
Acetyltransferase {ECO:0000313|EMBL:KGM32176.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
acetyltransferase
Displaying 20 items

View Taxonomy