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SCNpilot_expt_500_bf_scaffold_3269

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3269_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..566)
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JQ66_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ21987.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_500_bf_scaffold_3269_2
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(553..957)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CXK9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJN14749.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3269_3
unknown

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comp(995..1804)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B71A4E
SCNpilot_expt_500_bf_scaffold_3269_4
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2303..4546)
DNA (2244bp) protein (748aa)
Excinuclease ABC subunit A n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SK56_9DELT rbh
Daunorubicin resistance protein DrrC {ECO:0000313|EMBL:KKC37835.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
snorO; nogalamycin resistance protein SnorO rbh
SCNpilot_expt_500_bf_scaffold_3269_5
unknown

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comp(4630..4842)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3269_6
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4900..5580)
DNA (681bp) protein (227aa)
Putative ABC transporter transmembrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF58_PELHB
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative ABC transporter transmembrane protein; K09686 antibiotic transport system permease protein
SCNpilot_expt_500_bf_scaffold_3269_7
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5846..6793)
DNA (948bp) protein (316aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF57_PELHB rbh
ABC transporter {ECO:0000313|EMBL:KKB13325.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
multidrug ABC transporter ATPase; K09687 antibiotic transport system ATP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_3269_8
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7029..7829
DNA (801bp) protein (267aa)
Transcriptional regulator, TetR family n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D8L2_MYXXD rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:KFL31359.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
TetR family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_3269_9
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7861..8268
DNA (408bp) protein (136aa)
Ribosome-binding factor A n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R996_PELHB
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
ribosome-binding factor A; K02834 ribosome-binding factor A
SCNpilot_expt_500_bf_scaffold_3269_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8265..9161
DNA (897bp) protein (299aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R997_PELHB
SCNpilot_expt_500_bf_scaffold_3269_11
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9257..10981
DNA (1725bp) protein (575aa)
Chemotaxis protein methyltransferase CheR n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R998_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB13319.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
chemotaxis protein CheR
SCNpilot_expt_500_bf_scaffold_3269_12
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11114..11383
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Methylocystis parvus RepID=UPI0003006027
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
SCNpilot_expt_500_bf_scaffold_3269_13
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12967..13098)
DNA (132bp) protein (44aa)
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
SCNpilot_expt_500_bf_scaffold_3269_14
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13267..13779
DNA (513bp) protein (171aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
polyribonucleotide nucleotidyltransferase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9A0_PELHB
SCNpilot_expt_500_bf_scaffold_3269_15
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14047..15084)
DNA (1038bp) protein (346aa)
Sugar phosphate permease n=1 Tax=Polaromonas sp. CF318 RepID=J2KAZ5_9BURK
Sugar phosphate permease {ECO:0000313|EMBL:EJL77420.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
major facilitator transporter; K08167 MFS transporter, DHA2 family, methyl viologen resistance protein SmvA
SCNpilot_expt_500_bf_scaffold_3269_16
Gramella forsetii, Gramella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15719..16003
DNA (285bp) protein (95aa)
msrA; peptide methionine sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase {ECO:0000313|EMBL:CAL66558.1}; EC=1.8.4.11 {ECO:0000313|EMBL:CAL66558.1};; TaxID=411154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gramella.;" source="Gramella forsetii (strain KT0803).;"
Peptide methionine sulfoxide reductase n=1 Tax=Gramella forsetii (strain KT0803) RepID=A0M1R3_GRAFK
SCNpilot_expt_500_bf_scaffold_3269_17
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16023..16628)
DNA (606bp) protein (202aa)
TetR family transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZW1_9RHIZ
Transcriptional regulator, TetR family {ECO:0000313|EMBL:KFC66665.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
transcriptional regulator, TetR family
SCNpilot_expt_500_bf_scaffold_3269_18
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16756..17154
DNA (399bp) protein (133aa)
ABC transporter, permease protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F545_9RHIZ
Multidrug resistance protein {ECO:0000313|EMBL:KFC66664.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
major facilitator superfamily protein
Displaying 18 items

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