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SCNpilot_expt_500_bf_scaffold_3288

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3288_1
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..330)
DNA (330bp) protein (110aa)
Dipeptide transport system permease protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q982C8_RHILO
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein
Dipeptide transport system permease protein {ECO:0000313|EMBL:BAB54531.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_500_bf_scaffold_3288_2
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(330..1352)
DNA (1023bp) protein (341aa)
Dipeptide transport system permease protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q982C7_RHILO rbh
peptide ABC transporter permease; K02033 peptide/nickel transport system permease protein rbh
Dipeptide transport system permease protein {ECO:0000313|EMBL:BAB54532.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_500_bf_scaffold_3288_3
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1438..2943)
DNA (1506bp) protein (502aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Rhizobium sp. CF142 RepID=J2AT13_9RHIZ rbh
ABC-type dipeptide transport system, periplasmic component {ECO:0000313|EMBL:EJJ26495.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
oligopeptide ABC transporter periplasmic oligopeptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_3288_4
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3290..5629)
DNA (2340bp) protein (780aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Rhizobium sp. CF142 RepID=J2L0F0_9RHIZ rbh
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EJJ26494.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
two-component regulator rbh
SCNpilot_expt_500_bf_scaffold_3288_5
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5722..6336)
DNA (615bp) protein (205aa)
TetR family transcriptional regulator n=10 Tax=Vibrio nigripulchritudo RepID=F9TJ98_9VIBR
TetR family transcriptional regulator {ECO:0000313|EMBL:KKB11296.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative Transcriptional regulator, TetR family
SCNpilot_expt_500_bf_scaffold_3288_6
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6644..7117
DNA (474bp) protein (158aa)
MaoC domain protein dehydratase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H2P9_9PROT
Acyl dehydratase {ECO:0000313|EMBL:KKB11295.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
dehydratase
SCNpilot_expt_500_bf_scaffold_3288_7
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7450..8544
DNA (1095bp) protein (365aa)
Sugar permease n=1 Tax=Theonella swinhoei bacterial symbiont clone pSW1H8 RepID=A4U8T8_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB11374.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
family 1 extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_3288_8
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8578..9522
DNA (945bp) protein (315aa)
Sugar permease n=1 Tax=Theonella swinhoei bacterial symbiont clone pSW1H8 RepID=A4U8T9_9BACT rbh
ABC transporter permease {ECO:0000313|EMBL:KKB11373.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
binding-protein-dependent transport system inner membrane protein; K02025 multiple sugar transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_3288_9
unknown

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9522..9614
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3288_10
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9614..10381
DNA (768bp) protein (256aa)
Sugar permease n=1 Tax=Theonella swinhoei bacterial symbiont clone pSW1H8 RepID=A4U8U0_9BACT rbh
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB11372.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
binding-protein-dependent transporters inner membrane component; K02026 multiple sugar transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_3288_11
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10418..11404
DNA (987bp) protein (329aa)
Putative oxidoreductase n=1 Tax=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) RepID=A5CUF9_CLAM3
Uncharacterized protein {ECO:0000313|EMBL:KKB11294.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative oxidoreductase
SCNpilot_expt_500_bf_scaffold_3288_12
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11401..12228
DNA (828bp) protein (276aa)
Uncharacterized protein n=2 Tax=Rhodococcus RepID=Q0RZM6_RHOSR rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB11293.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_3288_13
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12230..12358
DNA (129bp) protein (43aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB11292.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
Displaying 13 items

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