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SCNpilot_expt_500_bf_scaffold_3360

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3360_1
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..293
DNA (291bp) protein (97aa)
isopropylmalate isomerase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
3-isopropylmalate dehydratase large subunit n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=LEUC_NITHX
SCNpilot_expt_500_bf_scaffold_3360_2
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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284..718
DNA (435bp) protein (145aa)
Acetylglutamate kinase {ECO:0000313|EMBL:CDP51357.1}; EC=2.7.2.8 {ECO:0000313|EMBL:CDP51357.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ENI3_METSB
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3360_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(759..1073)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031B4C29
Uncharacterized protein {ECO:0000313|EMBL:CDP53503.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3360_4
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1349..2557
DNA (1209bp) protein (403aa)
Diguanylate cyclase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F2W3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB13783.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3360_5
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2608..2895)
DNA (288bp) protein (96aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB13782.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_500_bf_scaffold_3360_6
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3053..3676)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFJ3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB13780.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3360_7
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3673..4386)
DNA (714bp) protein (238aa)
Purine nucleoside phosphorylase DeoD-type {ECO:0000256|HAMAP-Rule:MF_01627}; Short=PNP {ECO:0000256|HAMAP-Rule:MF_01627};; EC=2.4.2.1 {ECO:0000256|HAMAP-Rule:MF_01627};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
purine nucleoside phosphorylase; K03784 purine-nucleoside phosphorylase [EC:2.4.2.1]
Purine nucleoside phosphorylase DeoD-type n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6D2_PELHB
SCNpilot_expt_500_bf_scaffold_3360_8
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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4496..4834
DNA (339bp) protein (113aa)
Transcriptional regulator, ArsR family n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2QWU1_PIRSD
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ADB16045.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
SCNpilot_expt_500_bf_scaffold_3360_9
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4840..5304
DNA (465bp) protein (155aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2QWU2_PIRSD
Uncharacterized protein {ECO:0000313|EMBL:KKB78904.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Activator of Hsp90 ATPase 1 family protein
SCNpilot_expt_500_bf_scaffold_3360_10
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5359..6309
DNA (951bp) protein (317aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_01110};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01110}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
N-acetyl-gamma-glutamyl-phosphate reductase 2; K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] rbh
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00036654E4 rbh
SCNpilot_expt_500_bf_scaffold_3360_11
unknown

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6544..6645
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3360_12
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6992..8098
DNA (1107bp) protein (369aa)
ATPase component of ABC transporters with duplicated ATPase domain n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM32_9RHIZ
Putative ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KFC69135.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
ABC transporter
SCNpilot_expt_500_bf_scaffold_3360_13
bacterium UASB14, Bacteria

Not on your lists

8214..9191
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-77CS RepID=UPI0003602879
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:GAK51975.1}; TaxID=1499966 species="Bacteria.;" source="bacterium UASB14.;"
putative amino acid ABC transporter, substrate-binding protein
SCNpilot_expt_500_bf_scaffold_3360_14
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

9310..10416
DNA (1107bp) protein (369aa)
ribose ABC transporter n=1 Tax=Meiothermus timidus RepID=UPI00036A376D
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:AGK04505.1}; TaxID=504728 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21); (Thermus ruber).;"
SCNpilot_expt_500_bf_scaffold_3360_15
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

10413..11183
DNA (771bp) protein (257aa)
ABC transporter n=1 Tax=Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) RepID=D3PRF3_MEIRD
ABC transporter
ABC transporter {ECO:0000313|EMBL:AGK04506.1}; TaxID=504728 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21); (Thermus ruber).;"
SCNpilot_expt_500_bf_scaffold_3360_16
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11440..11805)
DNA (366bp) protein (122aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HNQ7_9RHIZ
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EHK57710.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_500_bf_scaffold_3360_17
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11820..12671)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBS8_PELHB rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:KKB12653.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_3360_18
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12924..13583
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003798B8D rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:EHK57709.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
TetR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_3360_19
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13580..14083
DNA (504bp) protein (168aa)
UPI0003CF539C related cluster n=1 Tax=unknown RepID=UPI0003CF539C
Uncharacterized protein {ECO:0000313|EMBL:ESW87679.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3360_20
unknown

Not on your lists

comp(14646..15350)
DNA (705bp) protein (235aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3360_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15993..16475)
DNA (483bp) protein (161aa)
Putative secreted protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETV6_9RHIZ
Putative secreted protein {ECO:0000313|EMBL:EYR81693.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Displaying 21 items

View Taxonomy