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SCNpilot_expt_500_bf_scaffold_3614

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3614_1
unknown

Not on your lists

comp(2..235)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3614_2
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

404..592
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F071_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS53927.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3614_3
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(769..1965)
DNA (1197bp) protein (399aa)
tRNA nucleotidyltransferase; K00970 poly(A) polymerase [EC:2.7.7.19] rbh
tRNA nucleotidyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6P8_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB13553.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_500_bf_scaffold_3614_4
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1962..2360)
DNA (399bp) protein (133aa)
Putative nudix hydrolase YeaB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6P9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB85416.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
putative nudix hydrolase YeaB
SCNpilot_expt_500_bf_scaffold_3614_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2637..3197)
DNA (561bp) protein (187aa)
Acetyltransferase {ECO:0000313|EMBL:CDP50232.1}; EC=2.3.1.- {ECO:0000313|EMBL:CDP50232.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Q0_PELHB
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3614_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3485..4000)
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VP27_RHOPX
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU42473.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_expt_500_bf_scaffold_3614_7
unknown

Not on your lists

comp(4261..4650)
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3614_8
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4825..6426
DNA (1602bp) protein (534aa)
Transcriptional regulator CadC n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z3P7_9BRAD rbh
Transcriptional regulator CadC {ECO:0000313|EMBL:KJC55783.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
transcriptional regulator CadC rbh
SCNpilot_expt_500_bf_scaffold_3614_9
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6436..7311)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003633692 rbh
Putative hydrolase {ECO:0000313|EMBL:CDN47203.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
alpha/beta hydrolase fold protein rbh
SCNpilot_expt_500_bf_scaffold_3614_10
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7452..7922)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Q2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL26771.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3614_11
unknown

Not on your lists

comp(8008..8676)
DNA (669bp) protein (223aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3614_12
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8911..10239
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Q4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB13546.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3614_13
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10229..11548
DNA (1320bp) protein (440aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|SAAS:SAAS00084342};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Q5_PELHB
SCNpilot_expt_500_bf_scaffold_3614_14
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11545..11877
DNA (333bp) protein (111aa)
Small multidrug resistance protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG27_9BURK
Small multidrug resistance protein {ECO:0000313|EMBL:EIK88167.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ethidium bromide-methyl viologen resistance protein EmrE; K03297 small multidrug resistance protein, SMR family
SCNpilot_expt_500_bf_scaffold_3614_15
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11977..12978)
DNA (1002bp) protein (334aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:CDP50246.1}; EC=1.1.1.1 {ECO:0000313|EMBL:CDP50246.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
YhdH, a putative quinone oxidoreductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6R2_PELHB rbh
YhdH, a putative quinone oxidoreductase rbh
SCNpilot_expt_500_bf_scaffold_3614_16
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13011..14762)
DNA (1752bp) protein (584aa)
Adenylate cyclase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6R3_PELHB
Adenylate cyclase {ECO:0000313|EMBL:KFC61681.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
adenylate cyclase
SCNpilot_expt_500_bf_scaffold_3614_17
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15032..15478
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6R4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB07259.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3614_18
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15984..16472
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D568_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB07219.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_500_bf_scaffold_3614_19
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16511..16705)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FRD1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX82020.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3614_20
unknown

Not on your lists

comp(16732..16845)
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying 20 items

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