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SCNpilot_expt_500_bf_scaffold_3810

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3810_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..214)
DNA (213bp) protein (71aa)
deoxyribose-phosphate aldolase; K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
Deoxyribose-phosphate aldolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFQ9_PELHB
Deoxyribose-phosphate aldolase {ECO:0000313|EMBL:KKB13156.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_500_bf_scaffold_3810_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(274..489)
DNA (216bp) protein (72aa)
cytidine deaminase; K01489 cytidine deaminase [EC:3.5.4.5]
Cytidine deaminase n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LZ58_METRJ
Cytidine deaminase {ECO:0000313|EMBL:KKB08168.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_3810_3
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(602..1567)
DNA (966bp) protein (322aa)
Sugar ABC transporter, permease protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NS70_9RHOB rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KKC38182.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
sugar ABC transporter permease; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_3810_4
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1571..2707)
DNA (1137bp) protein (379aa)
sugar ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F86140
Sugar ABC transporter permease {ECO:0000313|EMBL:KKB82250.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
putative nucleoside ABC transporter, permease 1 component; K02057 simple sugar transport system permease protein
SCNpilot_expt_500_bf_scaffold_3810_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2704..4326)
DNA (1623bp) protein (541aa)
putative nucleoside ABC transporter ATP-binding component; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
Putative nucleoside ABC transporter, ATP-binding component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFQ4_PELHB rbh
Predicted nucleoside ABC transporter, ATP-binding component {ECO:0000313|EMBL:CDP50606.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_500_bf_scaffold_3810_6
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4354..5349)
DNA (996bp) protein (332aa)
Putative nucleoside ABC transporter, substrate-binding component n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QJE6_9RHOB rbh
Putative nucleoside ABC transporter, substrate-binding component {ECO:0000313|EMBL:KFC61331.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
sugar ABC transporter substrate-binding protein; K07335 basic membrane protein A and related proteins rbh
SCNpilot_expt_500_bf_scaffold_3810_7
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5557..6018)
DNA (462bp) protein (154aa)
Carbon monoxide oxidation accessory protein CoxG-like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFQ2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB13150.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
carbon monoxide oxidation accessory protein CoxG-like protein; K09386 hypothetical protein
SCNpilot_expt_500_bf_scaffold_3810_8
unknown

Not on your lists

comp(7038..7163)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3810_9
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7438..8379
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFQ0_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KFL26531.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_3810_10
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8414..9982
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFP9_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KFL26530.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_3810_11
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10508..11188)
DNA (681bp) protein (227aa)
TetR family transcriptional regulator n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y3D3_9RHIZ rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:EHH13793.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
TetR family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_3810_12
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11425..11862
DNA (438bp) protein (146aa)
endoribonuclease n=1 Tax=Hoeflea sp. 108 RepID=UPI00037864BC
Endoribonuclease {ECO:0000313|EMBL:KKB06737.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
endoribonuclease L-PSP
SCNpilot_expt_500_bf_scaffold_3810_13
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11886..12113)
DNA (228bp) protein (76aa)
Multidrug DMT transporter permease n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PHG7_9CAUL
Multidrug DMT transporter permease {ECO:0000313|EMBL:ESQ87616.1}; TaxID=1282360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC460.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3810_14
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12110..12877)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037861E6
Putative membrane protein {ECO:0000313|EMBL:EHM02646.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
conserved membrane protein of unknown function
SCNpilot_expt_500_bf_scaffold_3810_15
Gluconobacter frateurii, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12880..13365
DNA (486bp) protein (162aa)
AsnC family transcriptional regulator n=1 Tax=Gluconobacter frateurii RepID=UPI00029A857A
Transcriptional regulator Lrp/AsnC {ECO:0000313|EMBL:GAN89350.1}; TaxID=1231354 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter frateurii M-2.;"
AsnC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_3810_16
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13408..14616)
DNA (1209bp) protein (403aa)
L-lactate dehydrogenase {ECO:0000313|EMBL:EYD74514.1}; EC=1.1.2.3 {ECO:0000313|EMBL:EYD74514.1};; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
L-lactate dehydrogenase (EC:1.1.2.3); K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
L-lactate dehydrogenase n=1 Tax=Rhizobium loti RepID=UPI00037243DE rbh
SCNpilot_expt_500_bf_scaffold_3810_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14713..15318
DNA (606bp) protein (202aa)
TetR family transcriptional regulator n=1 Tax=Rhizobium loti RepID=UPI00036D13A9
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:CDX41344.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
transcriptional regulator, TetR family
SCNpilot_expt_500_bf_scaffold_3810_18
unknown

Not on your lists

comp(15315..15527)
DNA (213bp) protein (71aa)

This feature has no annotations

Displaying 18 items

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