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SCNpilot_expt_500_bf_scaffold_10429

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_10429_1
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..198)
DNA (198bp) protein (66aa)
Extracytoplasmic function alternative sigma factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7F9_PELHB
Extracytoplasmic function alternative sigma factor {ECO:0000313|EMBL:KFC63498.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
extracytoplasmic function alternative sigma factor
SCNpilot_expt_500_bf_scaffold_10429_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(191..748)
DNA (558bp) protein (186aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A1B6_STAND
RNA polymerase sigma70 {ECO:0000313|EMBL:KKB85342.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_bf_scaffold_10429_3
unknown

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903..1250
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_10429_4
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1340..2218
DNA (879bp) protein (293aa)
Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7F6_PELHB rbh
HupC {ECO:0000313|EMBL:KKB80218.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
thiosulfate reductase cytochrome subunit B rbh
SCNpilot_expt_500_bf_scaffold_10429_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2243..2971
DNA (729bp) protein (243aa)
Sulfite oxidase-related enzyme n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6U4_PELHB
COG2041: Sulfite oxidase and related enzymes {ECO:0000313|EMBL:CDP50307.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
sulfite oxidase-related enzyme; K07147
SCNpilot_expt_500_bf_scaffold_10429_6
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3181..4005)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SQ21_NOCSJ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABL83906.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
SCNpilot_expt_500_bf_scaffold_10429_7
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(4034..4561)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI000360975E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL83905.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
SCNpilot_expt_500_bf_scaffold_10429_8
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5176..5490
DNA (315bp) protein (105aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
RNA helicase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FP62_9RHIZ
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:KFC61647.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Displaying 8 items

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