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SCNpilot_expt_500_bf_scaffold_17424

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_17424_1
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..715)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00035F50A2
Putative manganese transport system permease protein {ECO:0000313|EMBL:EAP77232.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
UbiA prenyltransferase
SCNpilot_expt_500_bf_scaffold_17424_2
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(712..1359)
DNA (648bp) protein (216aa)
3-hydroxy-3-methylglutaryl-coenzyme A reductase; K00021 hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34]
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00035EA13E rbh
3-hydroxy-3-methylglutaryl-coenzyme A reductase {ECO:0000313|EMBL:EAP77233.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
SCNpilot_expt_500_bf_scaffold_17424_3
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2066..2788)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B3067F
Uncharacterized protein {ECO:0000313|EMBL:KKB84988.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
cytochrome C biogenesis protein
SCNpilot_expt_500_bf_scaffold_17424_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2788..3183)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Propionibacterium sp. oral taxon 192 str. F0372 RepID=S3XDF5_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CDP51644.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
thioredoxin
SCNpilot_expt_500_bf_scaffold_17424_5
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3406..4329
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003653966 rbh
Sulfurtransferase {ECO:0000313|EMBL:KFL28136.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative Rhodanese-related sulfurtransferase
SCNpilot_expt_500_bf_scaffold_17424_6
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4441..5610
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035E74BF rbh
Membrane protein {ECO:0000313|EMBL:KFL28137.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein; K07112 rbh
SCNpilot_expt_500_bf_scaffold_17424_7
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5734..6507
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11BS0_MESSB
Uncharacterized protein {ECO:0000313|EMBL:KKB84985.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_17424_8
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6504..6926
DNA (423bp) protein (141aa)
Acetyltransferase {ECO:0000313|EMBL:CDP49865.1}; EC=2.3.1.- {ECO:0000313|EMBL:CDP49865.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035C1C72
hypothetical protein
SCNpilot_expt_500_bf_scaffold_17424_9
unknown

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comp(6966..7280)
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_17424_10
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7360..8070)
DNA (711bp) protein (237aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
anhydro-N-acetylmuramic acid kinase n=1 Tax=Martelella mediterranea RepID=UPI000368384C
anmK; anhydro-N-acetylmuramic acid kinase
SCNpilot_expt_500_bf_scaffold_17424_11
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8070..8423)
DNA (354bp) protein (118aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein; K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
anhydro-N-acetylmuramic acid kinase n=1 Tax=Martelella mediterranea RepID=UPI000368384C
SCNpilot_expt_500_bf_scaffold_17424_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8435..9439)
DNA (1005bp) protein (335aa)
Esterase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FT81_9RHIZ
Esterase {ECO:0000313|EMBL:KKB85922.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
esterase
SCNpilot_expt_500_bf_scaffold_17424_13
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9436..10071)
DNA (636bp) protein (212aa)
Peptide ABC transporter n=1 Tax=Nitratireductor indicus C115 RepID=K2NNF5_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL32744.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ATPase component of various ABC-type transport systems with duplicated ATPase domain
SCNpilot_expt_500_bf_scaffold_17424_14
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10163..10852)
DNA (690bp) protein (230aa)
ABC transporter n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LQC8_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL32744.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter
Displaying 14 items

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