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SCNpilot_expt_500_bf_scaffold_2118

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2118_1
Serratia sp. M24T3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..509)
DNA (507bp) protein (169aa)
amino acid ABC transporter permease n=1 Tax=gamma proteobacterium WG36 RepID=UPI00037227C2
Polar amino acid ABC transporter permease {ECO:0000313|EMBL:EIC85896.1}; TaxID=932213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. M24T3.;"
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_expt_500_bf_scaffold_2118_2
Erwinia typographi, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(585..1520)
DNA (936bp) protein (312aa)
ABC polar amino acid family transporter, periplasmic ligand binding protein n=1 Tax=Erwinia billingiae (strain Eb661) RepID=D8MQZ4_ERWBE rbh
Polar amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGT87398.1}; TaxID=371042 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia typographi.;"
polar amino acid ABC transporter substrate-binding protein; K02030 polar amino acid transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_2118_3
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2049..2846
DNA (798bp) protein (266aa)
GntR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI000375351A
Histidine utilization repressor {ECO:0000313|EMBL:EIM30478.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
GntR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2118_4
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2888..4300
DNA (1413bp) protein (471aa)
Dihydoxyacetone kinase, DhaK subunit {ECO:0000313|EMBL:AJK45240.1}; EC=2.7.1.29 {ECO:0000313|EMBL:AJK45240.1};; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
dihydroxyacetone kinase; K00863 dihydroxyacetone kinase [EC:2.7.1.29] rbh
dihydroxyacetone kinase n=1 Tax=Oceanicola sp. S124 RepID=UPI00025578A6 rbh
SCNpilot_expt_500_bf_scaffold_2118_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4249..4515
DNA (267bp) protein (89aa)
Dihydroxyacetone kinase, ATP-dependent {ECO:0000313|EMBL:GAO53259.1}; EC=2.7.1.29 {ECO:0000313|EMBL:GAO53259.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dihydroxyacetone kinase n=1 Tax=Oceanicola sp. S124 RepID=UPI00025578A6
dihydroxyacetone kinase, ATP-dependent/dihydroxyacetone kinase, DhaK subunit/dihydroxyacetone kinase, phosphoprotein-dependent, L subunit
SCNpilot_expt_500_bf_scaffold_2118_6
Streptomyces aurantiacus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(4628..5206)
DNA (579bp) protein (193aa)
Putative 21.2 kDa protein in hutC 3'region n=1 Tax=Streptomyces aurantiacus JA 4570 RepID=S3ZTI6_9ACTO
Putative 21.2 kDa protein in hutC 3'region {ECO:0000313|EMBL:EPH46503.1}; TaxID=1286094 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces aurantiacus JA 4570.;"
hypothetical protein; K09975 hypothetical protein
SCNpilot_expt_500_bf_scaffold_2118_7
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5215..6882)
DNA (1668bp) protein (556aa)
urocanate hydratase (EC:4.2.1.49); K01712 urocanate hydratase [EC:4.2.1.49] rbh
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Urocanate hydratase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AA53_STAND rbh
SCNpilot_expt_500_bf_scaffold_2118_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6897..7721)
DNA (825bp) protein (275aa)
N-formylglutamate amidohydrolase; K01479 formiminoglutamase [EC:3.5.3.8] rbh
N-formylglutamate amidohydrolase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2N2_9RHIZ rbh
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:EIM30474.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_expt_500_bf_scaffold_2118_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7718..9253)
DNA (1536bp) protein (512aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
histidine ammonia-lyase (EC:4.3.1.3); K01745 histidine ammonia-lyase [EC:4.3.1.3]
Histidine ammonia-lyase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2N3_9RHIZ rbh
SCNpilot_expt_500_bf_scaffold_2118_10
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9256..10410)
DNA (1155bp) protein (385aa)
imidazolonepropionase (EC:3.5.2.7); K01468 imidazolonepropionase [EC:3.5.2.7]
Imidazolonepropionase {ECO:0000255|HAMAP-Rule:MF_00372}; EC=3.5.2.7 {ECO:0000255|HAMAP-Rule:MF_00372};; Imidazolone-5-propionate hydrolase {ECO:0000255|HAMAP-Rule:MF_00372}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Imidazolonepropionase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=HUTI_METNO
SCNpilot_expt_500_bf_scaffold_2118_11
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10527..11882
DNA (1356bp) protein (452aa)
N-formimino-L-glutamate deiminase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSC4_9RHIZ rbh
N-formimino-L-glutamate deiminase {ECO:0000313|EMBL:EHK56334.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
formiminoglutamate deiminase rbh
SCNpilot_expt_500_bf_scaffold_2118_12
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11937..12680
DNA (744bp) protein (248aa)
UPI0003CE08AD related cluster n=1 Tax=unknown RepID=UPI0003CE08AD rbh
Histidine utilization repressor {ECO:0000313|EMBL:CDX39410.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
histidine utilization repressor rbh
SCNpilot_expt_500_bf_scaffold_2118_13
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12686..13747)
DNA (1062bp) protein (354aa)
Hydroxyacylglutathione hydrolase {ECO:0000313|EMBL:CDP51466.1}; EC=3.1.2.6 {ECO:0000313|EMBL:CDP51466.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
FAD dependent oxidoreductase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YA40_MESOW
FAD dependent oxidoreductase
Displaying 13 items

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