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SCNpilot_expt_500_bf_scaffold_2162

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2162_1
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..526)
DNA (525bp) protein (175aa)
propionyl-CoA carboxylase carboxyl transferase subunit; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3]
Propionyl-CoA carboxylase carboxyl transferase subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6R1_PELHB
Methylmalonyl-CoA carboxyltransferase {ECO:0000313|EMBL:KFL26779.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_500_bf_scaffold_2162_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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646..2052
DNA (1407bp) protein (469aa)
UPI0003D19FCC related cluster n=1 Tax=unknown RepID=UPI0003D19FCC
Cro/Cl family transcriptional regulator {ECO:0000313|EMBL:KKB86743.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
XRE family transcriptional regulator; K07110
SCNpilot_expt_500_bf_scaffold_2162_3
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2108..2374)
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y3T6_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH13604.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2162_4
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2411..3067)
DNA (657bp) protein (219aa)
Phage shock protein A, PspA n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y3T5_9RHIZ
Phage shock protein A, PspA {ECO:0000313|EMBL:EHH13603.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
phage shock protein A, PspA
SCNpilot_expt_500_bf_scaffold_2162_5
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3354..3959)
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000363AEE1
TetR family transcriptional regulator
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_500_bf_scaffold_2162_6
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4142..6055)
DNA (1914bp) protein (638aa)
Ferric siderophore transport system, periplasmic binding protein TonB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGR6_PELHB
Ferric siderophore transport system, periplasmic b inding protein TonB {ECO:0000313|EMBL:CDP50931.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ferric siderophore transport system, periplasmic binding protein TonB
SCNpilot_expt_500_bf_scaffold_2162_7
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6235..7041
DNA (807bp) protein (269aa)
quinolinate phosphoribosyltransferase (decarboxylating); K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
Nicotinate-nucleotide pyrophosphorylase n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QTS9_METTR
Quinolinate phosphoribosyltransferase (Decarboxylating) {ECO:0000313|EMBL:KFC71253.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_500_bf_scaffold_2162_8
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7038..7850
DNA (813bp) protein (271aa)
sulfate adenylyltransferase subunit 2; K00957 sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
3'-5'-bisphosphate nucleotidase n=1 Tax=Asticcacaulis sp. AC466 RepID=V4QQX8_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KKB10610.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_500_bf_scaffold_2162_9
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7993..8541
DNA (549bp) protein (183aa)
Transcriptional regulator, PadR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF70_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL28219.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
transcriptional regulator, PadR family
SCNpilot_expt_500_bf_scaffold_2162_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8553..9776
DNA (1224bp) protein (408aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF69_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP50043.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
RND family efflux transporter MFP subunit
SCNpilot_expt_500_bf_scaffold_2162_11
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9776..13126
DNA (3351bp) protein (1117aa)
Transporter, AcrB/AcrD/AcrF family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF68_PELHB
RND multidrug efflux transporter Acriflavin resis tance protein {ECO:0000313|EMBL:CDP50044.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
transporter, AcrB/AcrD/AcrF family protein
SCNpilot_expt_500_bf_scaffold_2162_12
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13190..14200)
DNA (1011bp) protein (337aa)
Fucose 4-O-acetylase {ECO:0000313|EMBL:EZP55181.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_500_bf_scaffold_2162_13
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14351..14821)
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037834A5
Uncharacterized protein {ECO:0000313|EMBL:KKB81235.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2162_14
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14826..16271)
DNA (1446bp) protein (482aa)
ABC transporter HlyB/MsbA family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF67_PELHB
ABC transporter HlyB/MsbA family protein {ECO:0000313|EMBL:KFC71246.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
ABC transporter HlyB/MsbA family; K06147 ATP-binding cassette, subfamily B, bacterial
Displaying 14 items

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