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SCNpilot_expt_500_bf_scaffold_2277

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2277_1
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..623)
DNA (621bp) protein (207aa)
uracil-DNA glycosylase; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
Uracil-DNA glycosylase, family 4 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBR5_PELHB
DNA polymerase {ECO:0000313|EMBL:KFL27147.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_500_bf_scaffold_2277_2
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

667..2331
DNA (1665bp) protein (555aa)
electron transfer flavoprotein-ubiquinone oxidoreductase; K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] rbh
Electron transfer flavoprotein-ubiquinone oxidoreductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBR6_PELHB rbh
Electron transfer flavoprotein-ubiquinone oxidoreductase {ECO:0000313|EMBL:KKB10879.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_500_bf_scaffold_2277_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2615..4354
DNA (1740bp) protein (580aa)
TPR domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBR7_PELHB rbh
TPR domain protein {ECO:0000313|EMBL:CDP50123.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2277_4
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4356..5231
DNA (876bp) protein (292aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBR8_PELHB
SCNpilot_expt_500_bf_scaffold_2277_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5318..6337)
DNA (1020bp) protein (340aa)
Decaprenyl diphosphate synthase {ECO:0000313|EMBL:CDP50117.1}; EC=2.5.1.91 {ECO:0000313|EMBL:CDP50117.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
multifunctional octaprenyl-diphosphate synthase/dimethylallyltransferase/geranyltranstransferase/geranylgeranyl pyrophosphate synthetase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90]
Octaprenyl-diphosphate synthase / dimethylallyltransferase / geranyltranstransferase (Farnesyldiphosphate synthase) / geranylgeranyl pyrophosphate synthetase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBS6_PELHB
SCNpilot_expt_500_bf_scaffold_2277_6
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6408..7190
DNA (783bp) protein (261aa)
tRNA (Adenine37-N(6)-)-methyltransferase TrmN6 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBS5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB84790.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
tRNA (adenine37-N(6)-)-methyltransferase TrmN6
SCNpilot_expt_500_bf_scaffold_2277_7
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7240..8064
DNA (825bp) protein (275aa)
Macromolecule metabolism n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBS4_PELHB rbh
Macromolecule metabolism {ECO:0000313|EMBL:KFC67355.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
degradation of proteins, peptides, glycopeptides rbh
SCNpilot_expt_500_bf_scaffold_2277_8
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8068..8283
DNA (216bp) protein (72aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL27140.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_500_bf_scaffold_2277_9
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8292..9170)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GY15_SORC5
Uncharacterized protein {ECO:0000313|EMBL:KKB10871.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2277_10
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9279..10037
DNA (759bp) protein (253aa)
glycyl-tRNA synthetase subunit alpha; K01878 glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
Glycine--tRNA ligase alpha subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBS2_PELHB
SCNpilot_expt_500_bf_scaffold_2277_11
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10018..10191
DNA (174bp) protein (58aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
glycyl-tRNA synthetase subunit alpha; K01878 glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
Glycine--tRNA ligase alpha subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBS2_PELHB
SCNpilot_expt_500_bf_scaffold_2277_12
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10243..11019)
DNA (777bp) protein (259aa)
Putative membrane protein n=1 Tax=Citreicella sp. SE45 RepID=D0DA45_9RHOB
Putative membrane protein {ECO:0000313|EMBL:EEX12997.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2277_13
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11125..11451)
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB82638.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_500_bf_scaffold_2277_14
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11551..12024)
DNA (474bp) protein (158aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
rnhA; ribonuclease H; K03469 ribonuclease HI [EC:3.1.26.4]
Ribonuclease H n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HN33_9RHIZ
SCNpilot_expt_500_bf_scaffold_2277_15
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12021..12548)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00035F2105
Acetyltransferase, GNAT family {ECO:0000313|EMBL:KFC69568.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
acetyltransferase
SCNpilot_expt_500_bf_scaffold_2277_16
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12545..13507)
DNA (963bp) protein (321aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003792C4D
SCNpilot_expt_500_bf_scaffold_2277_17
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13667..15907
DNA (2241bp) protein (747aa)
Pyruvate,phosphate dikinase {ECO:0000313|EMBL:CDP50106.1}; EC=2.7.9.1 {ECO:0000313|EMBL:CDP50106.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
pyruvate,phosphate dikinase; K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1] rbh
Pyruvate,phosphate dikinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBT4_PELHB rbh
SCNpilot_expt_500_bf_scaffold_2277_18
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16143..17153
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBT5_PELHB
Cell wall hydrolase SleB {ECO:0000313|EMBL:KFC69564.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
Displaying 18 items

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