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SCNpilot_expt_500_bf_scaffold_2697

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Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2697_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..133)
DNA (132bp) protein (44aa)
Putative glucose-methanol-choline oxidoreductase protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PQ75_RHIE6
glucose-methanol-choline oxidoreductase
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:KEC71646.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
SCNpilot_expt_500_bf_scaffold_2697_2
unknown

Not on your lists

317..1228
DNA (912bp) protein (304aa)
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2697_3
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1255..2580)
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Y5_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
SCNpilot_expt_500_bf_scaffold_2697_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2635..3120)
DNA (486bp) protein (162aa)
Tat pathway signal sequence n=1 Tax=Ralstonia sp. AU12-08 RepID=S9S172_9RALS
Probable transmembrane protein {ECO:0000313|EMBL:CDP53300.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2697_5
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3252..3965
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI000375C664
Uncharacterized protein {ECO:0000313|EMBL:KKB82295.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
LytR/AlgR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2697_6
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3976..4911)
DNA (936bp) protein (312aa)
Transcriptional regulator, LysR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBP8_PELHB rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:KFC64387.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_2697_7
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5121..6167)
DNA (1047bp) protein (349aa)
UPF0176 protein KKY_3710 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBQ1_PELHB
UPF0176 protein WH91_17060 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
rhodanese domain-containing protein; K07146 UPF0176 protein
SCNpilot_expt_500_bf_scaffold_2697_8
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6228..7256
DNA (1029bp) protein (343aa)
Putative aldo-keto reductase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZGR2_AZOL4
Aldo/keto reductase {ECO:0000313|EMBL:KFL24871.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative aldo-keto reductase
SCNpilot_expt_500_bf_scaffold_2697_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7468..11109)
DNA (3642bp) protein (1214aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
phenylalanyl-tRNA synthetase beta chain; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBQ4_PELHB
SCNpilot_expt_500_bf_scaffold_2697_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11106..11357)
DNA (252bp) protein (84aa)
Glycerol-3-phosphate ABC transporter, permease pro tein UgpE {ECO:0000313|EMBL:CDP50532.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_500_bf_scaffold_2697_11
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11703..12107)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000363C07A
ASCH domain-containing protein {ECO:0000313|EMBL:KJV11014.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
FIG00741848: hypothetical protein
SCNpilot_expt_500_bf_scaffold_2697_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12107..13237)
DNA (1131bp) protein (377aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
phenylalanyl-tRNA synthetase alpha chain; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBQ6_PELHB
SCNpilot_expt_500_bf_scaffold_2697_13
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13456..13857)
DNA (402bp) protein (134aa)
50S ribosomal protein L20 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBQ7_PELHB
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
SCNpilot_expt_500_bf_scaffold_2697_14
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13871..14071)
DNA (201bp) protein (67aa)
50S ribosomal protein L35 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBQ8_PELHB
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
SCNpilot_expt_500_bf_scaffold_2697_15
unknown

Not on your lists

14284..14448
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2697_16
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14445..14867)
DNA (423bp) protein (141aa)
Transcriptional regulator, MarR family id=2735428 bin=GWF1_Rhodobacteraceae_65_7 species=Polymorphum gilvum genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
transcriptional regulator
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_expt_500_bf_scaffold_2697_17
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14949..15347)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. SJ98 RepID=K8RR35_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KHS05363.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2697_18
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15344..15709)
DNA (366bp) protein (122aa)
Uncharacterized protein {ECO:0000313|EMBL:KJC62562.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_expt_500_bf_scaffold_2697_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15814..16383)
DNA (570bp) protein (190aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00037A8BD9
Transcriptional regulator {ECO:0000313|EMBL:EJC66655.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2697_20
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16347..16658)
DNA (312bp) protein (104aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium sp. Pop5 RepID=K0VWF4_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:EJZ21795.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2697_21
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16763..17386
DNA (624bp) protein (208aa)
oxidoreductase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037F7F76
Oxidoreductase {ECO:0000313|EMBL:KFL32382.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
coenzyme F420-dependent NADP oxidoreductase; K06988
SCNpilot_expt_500_bf_scaffold_2697_22
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17530..17898
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037D45C8
Uncharacterized protein {ECO:0000313|EMBL:CCV06415.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2697_23
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18099..18623)
DNA (525bp) protein (175aa)
Translation initiation factor IF-3 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBP6_PELHB
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
translation initiation factor 3; K02520 translation initiation factor IF-3
SCNpilot_expt_500_bf_scaffold_2697_24
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18805..19623
DNA (819bp) protein (273aa)
2-hydroxymuconic semialdehyde hydrolase {ECO:0000313|EMBL:CDP50520.1}; EC=3.1.1.- {ECO:0000313|EMBL:CDP50520.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
2-hydroxymuconic semialdehyde hydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBP7_PELHB rbh
2-hydroxymuconic semialdehyde hydrolase rbh
SCNpilot_expt_500_bf_scaffold_2697_25
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19669..20238
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6UYW9_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:GAB88663.1}; TaxID=1108045 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2697_26
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20210..20671)
DNA (462bp) protein (154aa)
Acetyltransferase, ribosomal protein N-acetylase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KIQ6_MESAW
acetyltransferase, ribosomal protein N-acetylase
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_expt_500_bf_scaffold_2697_27
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20668..21540)
DNA (873bp) protein (291aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R995_PELHB rbh
Nucleoside-diphosphate-sugar epimerases {ECO:0000313|EMBL:CDP50518.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
nucleoside-diphosphate-sugar epimerase rbh
SCNpilot_expt_500_bf_scaffold_2697_28
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21554..22744)
DNA (1191bp) protein (397aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
Iron-sulfur cluster-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R994_PELHB
(Fe-S)-binding protein
SCNpilot_expt_500_bf_scaffold_2697_29
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22725..23402)
DNA (678bp) protein (226aa)
glutathione S-transferase family protein; K00799 glutathione S-transferase [EC:2.5.1.18] rbh
Glutathione S-transferase family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R993_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB76403.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_500_bf_scaffold_2697_30
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23454..24266
DNA (813bp) protein (271aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
bacA1; Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XQV9_RHIRD
Displaying items 1-30 of 52 in total

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