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SCNpilot_expt_500_bf_scaffold_2725

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2725_1
unknown

Not on your lists

3..71
DNA (69bp) protein (23aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2725_2
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68..427
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YW46_BRASO
hypothetical protein; K06903
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_2725_3
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

429..653
DNA (225bp) protein (75aa)
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_2725_4
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

644..2908
DNA (2265bp) protein (755aa)
Uncharacterized protein n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G9A4_CHLAD rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_2725_5
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2905..4266
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GGS7_ALIDK
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_2725_6
unknown

Not on your lists

comp(4183..4575)
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2725_7
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4665..5855
DNA (1191bp) protein (397aa)
Putative uncharacterized protein n=2 Tax=Chloroflexus RepID=A9WFN4_CHLAA rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_2725_8
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5848..7092
DNA (1245bp) protein (415aa)
Putative uncharacterized protein n=2 Tax=Chloroflexus RepID=A9WFN5_CHLAA
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_2725_9
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7142..8065
DNA (924bp) protein (308aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1H9_ALIDB
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_2725_10
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8075..11980
DNA (3906bp) protein (1302aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VSB9_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_2725_11
unknown

Not on your lists

12005..12901
DNA (897bp) protein (299aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2725_12
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12925..14340)
DNA (1416bp) protein (472aa)
Transcriptional regulator, GntR family domain / As partate aminotransferase {ECO:0000313|EMBL:CDP50599.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CDP50599.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
GntR family transcriptional regulator n=1 Tax=Rhizobium sp. Pop5 RepID=K0VK22_9RHIZ
GntR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2725_13
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14428..15291
DNA (864bp) protein (288aa)
transporter n=1 Tax=Rhizobium leguminosarum RepID=UPI000381A189 rbh
Transporter {ECO:0000313|EMBL:KFL32669.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2725_14
unknown

Not on your lists

comp(15356..15802)
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2725_15
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15790..17358)
DNA (1569bp) protein (523aa)
Uncharacterized protein {ECO:0000313|EMBL:KJB90265.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SCNpilot_expt_500_bf_scaffold_2725_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18534..19766)
DNA (1233bp) protein (411aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PE15_9BRAD rbh
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKS36603.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily rbh
SCNpilot_expt_500_bf_scaffold_2725_17
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19767..20123)
DNA (357bp) protein (119aa)
Bll6613 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89FT6_BRADU
hypothetical protein
DGPF domain-containing protein {ECO:0000313|EMBL:KJC45959.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
SCNpilot_expt_500_bf_scaffold_2725_18
unknown

Not on your lists

20393..20809
DNA (417bp) protein (139aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2725_19
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21065..22636
DNA (1572bp) protein (524aa)
Integral membrane protein TerC n=2 Tax=Rhodospirillum rubrum RepID=G2T8M1_RHORU rbh
Membrane protein {ECO:0000313|EMBL:KDP75673.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
integral membrane protein TerC rbh
SCNpilot_expt_500_bf_scaffold_2725_20
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22868..23242
DNA (375bp) protein (125aa)
membrane protein n=1 Tax=Glaciibacter superstes RepID=UPI0003B771D8
Uncharacterized protein {ECO:0000313|EMBL:KFL31887.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2725_21
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23754..23960
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003157A2D
Transcriptional regulator {ECO:0000313|EMBL:AIB15279.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
winged helix family two component transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2725_22
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23944..25284
DNA (1341bp) protein (447aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00037F12F4
Signal transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_2725_23
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25218..26045)
DNA (828bp) protein (276aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
bacA2; Undecaprenyl-diphosphatase 2 (EC:3.6.1.27) rbh
UDP pyrophosphate phosphatase n=1 Tax=Martelella mediterranea RepID=UPI00037ECAC7 rbh
SCNpilot_expt_500_bf_scaffold_2725_24
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26380..26898
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NKU0_RHISP
Uncharacterized protein {ECO:0000313|EMBL:KKB75932.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2725_25
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27123..27395
DNA (273bp) protein (91aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
inorganic diphosphatase; K01507 inorganic pyrophosphatase [EC:3.6.1.1]
UPI0003CE17B5 related cluster n=1 Tax=unknown RepID=UPI0003CE17B5
Displaying 25 items

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