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SCNpilot_expt_500_bf_scaffold_2919

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2919_1
unknown

Not on your lists

comp(3..137)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2919_2
unknown

Not on your lists

comp(186..431)
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2919_3
unknown

Not on your lists

comp(853..1020)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2919_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1317..1763
DNA (447bp) protein (149aa)
Beta-mannosidase {ECO:0000313|EMBL:CDP52698.1}; EC=3.2.1.25 {ECO:0000313|EMBL:CDP52698.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
beta-mannosidase; K01192 beta-mannosidase [EC:3.2.1.25]
Beta-mannosidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE40_PELHB
SCNpilot_expt_500_bf_scaffold_2919_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1917..2906)
DNA (990bp) protein (330aa)
Putative quinone oxidoreductase {ECO:0000313|EMBL:KFC75615.1}; EC=1.6.5.5 {ECO:0000313|EMBL:KFC75615.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
quinone oxidoreductase; K00344 NADPH2:quinone reductase [EC:1.6.5.5]
Probable quinone oxidoreductase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98I31_RHILO
SCNpilot_expt_500_bf_scaffold_2919_6
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3012..3392
DNA (381bp) protein (127aa)
Putative transcriptional regulator n=1 Tax=Rhizobium sp. CF142 RepID=J1SL62_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:EJJ25968.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
HxlR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2919_7
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

3445..3966
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=SAR116 cluster alpha proteobacterium HIMB100 RepID=G6A1N5_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
SCNpilot_expt_500_bf_scaffold_2919_8
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4071..4982
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCM2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFC71179.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
SCNpilot_expt_500_bf_scaffold_2919_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4984..5901
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCM2_PELHB rbh
Membrane protein {ECO:0000313|EMBL:CDP50088.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter rbh
SCNpilot_expt_500_bf_scaffold_2919_10
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5898..6194)
DNA (297bp) protein (99aa)
Plasmid maintenance protein CcdB n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YNG8_9RHIZ
Putative plasmid maintenance protein, CcdB {ECO:0000313|EMBL:AHK46421.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
ccdB; CcdB-like toxin protein
SCNpilot_expt_500_bf_scaffold_2919_11
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6194..6421)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B4782E
Uncharacterized protein {ECO:0000313|EMBL:ESY90882.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2919_12
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6478..7320)
DNA (843bp) protein (281aa)
iron ABC transporter permease n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000374BB39 rbh
Manganese ABC transporter, inner membrane permease protein SitD {ECO:0000313|EMBL:BAQ16229.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
ABC transporter rbh
SCNpilot_expt_500_bf_scaffold_2919_13
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7320..8177)
DNA (858bp) protein (286aa)
Chelated iron transport system membrane protein yfeC n=1 Tax=Xenorhabdus bovienii (strain SS-2004) RepID=D3V1I6_XENBS rbh
chelated iron transport system membrane protein yfeC; K11605 manganese/iron transport system permease protein rbh
Chelated iron transport system membrane protein yfeC {ECO:0000313|EMBL:CBJ81530.1}; TaxID=406818 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii (strain SS-2004).;"
SCNpilot_expt_500_bf_scaffold_2919_14
unknown

Not on your lists

comp(8174..9091)
DNA (918bp) protein (306aa)
Iron ABC transporter permease n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SEM4_9RHIZ rbh
Chelated iron transport system membrane protein YfeB {ECO:0000313|EMBL:CPR15493.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
ABC transporter-like protein; K11607 manganese/iron transport system ATP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_2919_15
Serratia fonticola, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9088..9948)
DNA (861bp) protein (287aa)
Periplasmic chelated iron-binding protein yfeA n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SCZ4_YERMO rbh
Iron-binding protein {ECO:0000313|EMBL:AKG71195.1}; TaxID=47917 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia fonticola.;"
heavy metal ABC transporter substrate-binding protein; K11604 manganese/iron transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_2919_16
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9976..11322)
DNA (1347bp) protein (449aa)
manganese transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI00037C8ACF rbh
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
putative manganese transport protein (MntH-like), Nramp family rbh
SCNpilot_expt_500_bf_scaffold_2919_17
Mesorhizobium sp. LNJC405B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11520..12869
DNA (1350bp) protein (450aa)
UPI0003CF7E40 related cluster n=1 Tax=unknown RepID=UPI0003CF7E40 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESX98485.1}; TaxID=1287281 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC405B00.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2919_18
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13068..13277
DNA (210bp) protein (70aa)
Cold-shock DNA-binding domain protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D8D2_9RHIZ
Cold shock protein {ECO:0000313|EMBL:EDQ33274.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_500_bf_scaffold_2919_19
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13334..14278)
DNA (945bp) protein (315aa)
NADH dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003616A40
NADH dehydrogenase {ECO:0000313|EMBL:KKC39791.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
NADH dehydrogenase, FAD-containing subunit
Displaying 19 items

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