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SCNpilot_expt_500_bf_scaffold_7629

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_7629_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..638
DNA (636bp) protein (212aa)
Xanthine dehydrogenase accessory protein XdhC n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FQI8_9RHIZ
XdhC protein {ECO:0000313|EMBL:KKB13745.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
xdhC; xanthine dehydrogenase accessory protein XdhC
SCNpilot_expt_500_bf_scaffold_7629_2
unknown

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comp(1209..1457)
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_7629_3
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1610..2161
DNA (552bp) protein (184aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
Ribose transport ATP-binding protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YG15_MOBAS
ABC transporter {ECO:0000313|EMBL:KFL26797.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_500_bf_scaffold_7629_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2187..3227
DNA (1041bp) protein (347aa)
sugar ABC transporter permease n=1 Tax=Aureimonas ureilytica RepID=UPI00038111D8 rbh
Nucleoside ABC transporter, permease protein 1 {ECO:0000313|EMBL:CDP50267.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative ABC transporter; permease component
SCNpilot_expt_500_bf_scaffold_7629_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3224..4153
DNA (930bp) protein (310aa)
Ribose transport system permease protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YG17_MOBAS rbh
Putative deoxyribose-specific ABC transporter, per mease protein {ECO:0000313|EMBL:CDP50266.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein
SCNpilot_expt_500_bf_scaffold_7629_6
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4200..4766
DNA (567bp) protein (189aa)
DNA-binding protein n=1 Tax=Aureimonas ureilytica RepID=UPI00035FC5C9
Bmp family protein {ECO:0000313|EMBL:CDP50265.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
basic membrane lipoprotein; K02058 simple sugar transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_7629_7
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4706..5218
DNA (513bp) protein (171aa)
ABC transporter periplasmic binding protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YG18_MOBAS
Uncharacterized protein {ECO:0000313|EMBL:KFL26794.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
ABC transporter; K02058 simple sugar transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_7629_8
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5545..6765
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6ATQ4_RHILS
Cysteine desulfurase {ECO:0000313|EMBL:KKC37441.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_7629_9
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6762..8069
DNA (1308bp) protein (436aa)
guanine deaminase; K01487 guanine deaminase [EC:3.5.4.3] rbh
Guanine deaminase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6S8_PELHB rbh
Guanine deaminase {ECO:0000313|EMBL:AEQ52242.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_500_bf_scaffold_7629_10
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8281..8805
DNA (525bp) protein (175aa)
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
malate synthase G; K01638 malate synthase [EC:2.3.3.9]
Malate synthase G n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6S7_PELHB
SCNpilot_expt_500_bf_scaffold_7629_11
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8822..10375
DNA (1554bp) protein (518aa)
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
malate synthase G; K01638 malate synthase [EC:2.3.3.9]
Malate synthase G n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6S7_PELHB
SCNpilot_expt_500_bf_scaffold_7629_12
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10536..11027)
DNA (492bp) protein (164aa)
X-Pro dipeptidyl-peptidase-like protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9P642_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KFL32009.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
X-Pro dipeptidyl-peptidase; K06978
SCNpilot_expt_500_bf_scaffold_7629_13
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11062..12138)
DNA (1077bp) protein (359aa)
X-Pro dipeptidyl-peptidase domain protein n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A503_THECD
Uncharacterized protein {ECO:0000313|EMBL:KFL32009.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
X-Pro dipeptidyl-peptidase domain-containing protein; K06978
SCNpilot_expt_500_bf_scaffold_7629_14
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12135..13619)
DNA (1485bp) protein (495aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
adenine deaminase; K01486 adenine deaminase [EC:3.5.4.2]
Adenine deaminase n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2KWZ3_9PROT
SCNpilot_expt_500_bf_scaffold_7629_15
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13643..13774)
DNA (132bp) protein (44aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_expt_500_bf_scaffold_7629_16
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13925..14098
DNA (174bp) protein (58aa)
Uncharacterized protein {ECO:0000313|EMBL:CDP50260.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_500_bf_scaffold_7629_17
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14698..15051
DNA (354bp) protein (118aa)
DNA topoisomerase n=1 Tax=Streptomyces somaliensis RepID=UPI00029A6B35
Uncharacterized protein {ECO:0000313|EMBL:CDP50259.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
topoisomerase IB
SCNpilot_expt_500_bf_scaffold_7629_18
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15061..16236)
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035D099F
Putative diguanylate cyclase GGDEF {ECO:0000313|EMBL:KFC61673.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_7629_19
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16326..17009)
DNA (684bp) protein (228aa)
Diguanylate cyclase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TNU4_MESCW
Uncharacterized protein {ECO:0000313|EMBL:KKB85892.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
diguanylate cyclase
Displaying 19 items

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