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SCNpilot_expt_500_bf_scaffold_7781

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_7781_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..291)
DNA (291bp) protein (97aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
tRNA-guanine transglycosylase; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
Queuine tRNA-ribosyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Q6_PELHB
SCNpilot_expt_500_bf_scaffold_7781_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(389..1606)
DNA (1218bp) protein (406aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] rbh
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Q7_PELHB rbh
SCNpilot_expt_500_bf_scaffold_7781_3
unknown

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comp(1603..1998)
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_7781_4
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1983..2384)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FTD6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX82538.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
SCNpilot_expt_500_bf_scaffold_7781_5
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2381..2857)
DNA (477bp) protein (159aa)
peptidyl-prolyl cis-trans isomerase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037486D7
Peptidylprolyl isomerase {ECO:0000313|EMBL:KKB11992.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
cyclophilin type peptidyl-prolyl cis-trans isomerase
SCNpilot_expt_500_bf_scaffold_7781_6
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2937..3512)
DNA (576bp) protein (192aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:CDP54203.1}; EC=5.2.1.8 {ECO:0000313|EMBL:CDP54203.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8); K01802 peptidylprolyl isomerase [EC:5.2.1.8]
Putative peptidyl-prolyl cis-trans isomerase n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CR98_9RHOB
SCNpilot_expt_500_bf_scaffold_7781_7
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3512..4000)
DNA (489bp) protein (163aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
phosphopantetheine adenylyltransferase; K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
Phosphopantetheine adenylyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9R0_PELHB
SCNpilot_expt_500_bf_scaffold_7781_8
unknown

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comp(4114..4416)
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_7781_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4503..4676)
DNA (174bp) protein (58aa)
Putative threonine efflux protein {ECO:0000313|EMBL:CDP54205.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_500_bf_scaffold_7781_10
unknown

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4947..5123
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_7781_11
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5152..5577)
DNA (426bp) protein (142aa)
Putative amino acid efflux protein, LysE family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9R1_PELHB
Transporter {ECO:0000313|EMBL:KKB11995.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative amino acid efflux protein, LysE family
SCNpilot_expt_500_bf_scaffold_7781_12
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5577..5750)
DNA (174bp) protein (58aa)
Lysine exporter protein LysE/YggA n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M968_9RHIZ
Putative amino acid efflux protein, LysE family {ECO:0000313|EMBL:KFC72529.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_500_bf_scaffold_7781_13
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6424..6543
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZXC9_RHILW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI55953.1}; Flags: Precursor;; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_500_bf_scaffold_7781_14
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6578..6940
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0W7P1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL28026.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_7781_15
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7054..8193)
DNA (1140bp) protein (380aa)
Peptidase, S41 family protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LG58_AGRSH
peptidase, S41 family protein
Peptidase, S41 family protein {ECO:0000313|EMBL:ADY68040.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_expt_500_bf_scaffold_7781_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8165..8344)
DNA (180bp) protein (60aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
gyrA; DNA gyrase subunit A (EC:3.1.21.-); K02469 DNA gyrase subunit A [EC:5.99.1.3]
PREDICTED: probable DNA gyrase subunit A, chloroplastic/mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1B446
SCNpilot_expt_500_bf_scaffold_7781_17
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(9539..10336)
DNA (798bp) protein (266aa)
DNA gyrase, A subunit n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0LE63_9ACTO
DNA gyrase, A subunit {ECO:0000313|EMBL:CCH22110.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
Displaying 17 items

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