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SCNpilot_expt_500_bf_scaffold_7935

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_7935_1
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..442)
DNA (441bp) protein (147aa)
peptidase A24A prepilin type IV; K02278 prepilin peptidase CpaA [EC:3.4.23.43]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKF5_AFIFE
Peptidase {ECO:0000313|EMBL:KFL26547.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_500_bf_scaffold_7935_2
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(576..767)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UFJ7_9RHOB
Pilus assembly protein {ECO:0000313|EMBL:KKC33082.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
pilA; component of type IV pilus; K02651 pilus assembly protein Flp/PilA
SCNpilot_expt_500_bf_scaffold_7935_3
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1085..1531
DNA (447bp) protein (149aa)
Secretin RcpA/CpaC-like protein, associated with Flp pilus assembly n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFR8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB76719.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
secretin RcpA/CpaC-like protein, associated with Flp pilus assembly
SCNpilot_expt_500_bf_scaffold_7935_4
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1673..2251
DNA (579bp) protein (193aa)
TadZ/CpaE, associated with Flp pilus assembly-like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFR7_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB13166.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
TadZ/CpaE, associated with Flp pilus assembly-like protein
SCNpilot_expt_500_bf_scaffold_7935_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2251..2799
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MTH8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CDP50617.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_7935_6
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2962..3582
DNA (621bp) protein (207aa)
haloacid dehalogenase; K01560 2-haloacid dehalogenase [EC:3.8.1.2] rbh
Haloacid dehalogenase-like hydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFR5_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB81580.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
SCNpilot_expt_500_bf_scaffold_7935_7
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3671..4300)
DNA (630bp) protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
upp; uracil phosphoribosyltransferase (EC:2.4.2.9); K00761 uracil phosphoribosyltransferase [EC:2.4.2.9] rbh
Uracil phosphoribosyltransferase n=1 Tax=Nitratireductor indicus C115 RepID=K2N9G3_9RHIZ rbh
SCNpilot_expt_500_bf_scaffold_7935_8
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4315..4668)
DNA (354bp) protein (118aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
phosphopentomutase; K01839 phosphopentomutase [EC:5.4.2.7]
Phosphopentomutase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFR3_PELHB
SCNpilot_expt_500_bf_scaffold_7935_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4641..5462)
DNA (822bp) protein (274aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
phosphopentomutase; K01839 phosphopentomutase [EC:5.4.2.7]
Phosphopentomutase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFR3_PELHB
SCNpilot_expt_500_bf_scaffold_7935_10
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5465..6784)
DNA (1320bp) protein (440aa)
Thymidine phosphorylase {ECO:0000256|SAAS:SAAS00031984}; EC=2.4.2.4 {ECO:0000256|SAAS:SAAS00031985};; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
thymidine phosphorylase; K00758 thymidine phosphorylase [EC:2.4.2.4]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000375420D rbh
SCNpilot_expt_500_bf_scaffold_7935_11

Not on your lists

comp(6843..7583)
DNA (741bp) protein (247aa)
AraC family transcriptional regulator n=2 Tax=Paenibacillus mucilaginosus RepID=F8FHV6_PAEMK
Helix-turn-helix domain protein {ECO:0000313|EMBL:AIA14491.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
AraC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_7935_12
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7584..8135
DNA (552bp) protein (184aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BZX7_BEUC1
Glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ACQ81307.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_500_bf_scaffold_7935_13
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8209..9132)
DNA (924bp) protein (308aa)
Permease n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EK63_9RHOB rbh
Permease {ECO:0000313|EMBL:ESW60619.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
permease, DMT superfamily
SCNpilot_expt_500_bf_scaffold_7935_14
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9246..9734)
DNA (489bp) protein (163aa)
Transcriptional regulator n=1 Tax=Streptomyces rimosus subsp. rimosus ATCC 10970 RepID=L8EGQ6_STRRM
Uncharacterized protein {ECO:0000313|EMBL:KKB77847.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
MarR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_7935_15
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9851..11110
DNA (1260bp) protein (420aa)
Secretion protein n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LRJ8_DINSH
Uncharacterized protein {ECO:0000313|EMBL:KKB85860.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
secretion protein
SCNpilot_expt_500_bf_scaffold_7935_16
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11156..12223
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2I892_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKB85803.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_500_bf_scaffold_7935_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12031..14691)
DNA (2661bp) protein (887aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI0003625180 rbh
Strain MEJ076 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ02717.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
bacteriophytochrome protein rbh
SCNpilot_expt_500_bf_scaffold_7935_18
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14691..15233)
DNA (543bp) protein (181aa)
Heme oxygenase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PHF1_9RHIZ
Heme oxygenase {ECO:0000313|EMBL:EKF60258.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
heme oxygenase; K07215 heme oxygenase
Displaying 18 items

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