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SCNpilot_expt_500_bf_scaffold_6694

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_6694_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..911
DNA (909bp) protein (303aa)
Peptidoglycan-binding domain 1 protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTN2_ALIDB rbh
peptidoglycan-binding domain 1 protein rbh
Peptidoglycan-binding domain-containing protein {ECO:0000313|EMBL:GAO25185.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_6694_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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954..2072
DNA (1119bp) protein (373aa)
uroporphyrinogen decarboxylase (EC:4.1.1.37); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37] rbh
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Uroporphyrinogen decarboxylase n=2 Tax=Alicycliphilus denitrificans RepID=E8TTN3_ALIDB rbh
SCNpilot_expt_500_bf_scaffold_6694_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2689..4767
DNA (2079bp) protein (693aa)
primosomal protein n'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] rbh
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Primosomal protein N n=2 Tax=Alicycliphilus denitrificans RepID=E8TTN4_ALIDB rbh
SCNpilot_expt_500_bf_scaffold_6694_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4783..6414)
DNA (1632bp) protein (544aa)
long-chain fatty-acid-CoA ligase (EC:6.2.1.3); K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] rbh
Putative long-chain fatty-acid-CoA ligase n=1 Tax=Comamonas testosteroni S44 RepID=D8D8F2_COMTE rbh
Putative long-chain fatty-acid-CoA ligase {ECO:0000313|EMBL:EFI60828.1}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
SCNpilot_expt_500_bf_scaffold_6694_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6431..7069)
DNA (639bp) protein (213aa)
TetR family transcriptional regulator n=1 Tax=Comamonas testosteroni S44 RepID=D8D8F1_COMTE
TetR family transcriptional regulator {ECO:0000313|EMBL:KGH24174.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
TetR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_6694_6
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7450..8091
DNA (642bp) protein (214aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:EFI60826.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EFI60826.1};; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
Enoyl-CoA hydratase n=1 Tax=Comamonas testosteroni S44 RepID=D8D8F0_COMTE
enoyl-CoA hydratase
SCNpilot_expt_500_bf_scaffold_6694_7
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8113..9261)
DNA (1149bp) protein (383aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KJA10965.1}; EC=2.3.1.9 {ECO:0000313|EMBL:KJA10965.1};; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] rbh
Acetyl-CoA acetyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TTN5_ALIDB rbh
SCNpilot_expt_500_bf_scaffold_6694_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9273..10052)
DNA (780bp) protein (260aa)
enoyl-CoA hydratase/isomerase; K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] rbh
Enoyl-CoA hydratase/isomerase n=2 Tax=Alicycliphilus denitrificans RepID=E8TTN6_ALIDB rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:GAO25189.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_6694_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10059..11879)
DNA (1821bp) protein (607aa)
Long-chain-fatty-acid--CoA ligase (EC:6.2.1.3); K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] rbh
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:AEB86576.1}; EC=6.2.1.3 {ECO:0000313|EMBL:AEB86576.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Long-chain-fatty-acid--CoA ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6W4_ALIDK rbh
SCNpilot_expt_500_bf_scaffold_6694_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11876..12697)
DNA (822bp) protein (274aa)
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TTN7_ALIDB rbh
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein rbh
ABC transporter related protein {ECO:0000313|EMBL:ADV01623.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_6694_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12860..13894)
DNA (1035bp) protein (345aa)
Extracellular ligand-binding receptor n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTN8_ALIDB
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAO25192.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Displaying 11 items

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