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SCNpilot_expt_500_bf_scaffold_11892

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_11892_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..460
DNA (459bp) protein (153aa)
PAS sensor protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVD4_ALIDB rbh
pas sensor protein rbh
Pas sensor protein {ECO:0000313|EMBL:GAO25368.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_11892_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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457..1062
DNA (606bp) protein (202aa)
Response regulator receiver n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVD3_ALIDB rbh
response regulator receiver; K07183 response regulator NasT rbh
Response regulator receiver {ECO:0000313|EMBL:GAO25367.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_11892_3
unknown

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comp(1092..2369)
DNA (1278bp) protein (426aa)
hypothetical protein id=12551793 bin=BDI species=Thauera aminoaromatica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
SCNpilot_expt_500_bf_scaffold_11892_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2579..3550
DNA (972bp) protein (324aa)
Diguanylate cyclase/phosphodiesterase with extracellular sensor n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8K5_ALIDK rbh
extracellular sensor-containing diguanylate cyclase/phosphodiesterase rbh
Diguanylate cyclase/phosphodiesterase with extracellular sensor {ECO:0000313|EMBL:AEB86730.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_11892_5
unknown

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comp(3541..3918)
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_11892_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4185..4886
DNA (702bp) protein (234aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8K4_ALIDK
methyl-accepting chemotaxis sensory transducer; K05874 methyl-accepting chemotaxis protein I, serine sensor receptor
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:AEB86729.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_11892_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4838..5173
DNA (336bp) protein (112aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8K4_ALIDK
methyl-accepting chemotaxis sensory transducer; K05874 methyl-accepting chemotaxis protein I, serine sensor receptor
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:AEB86729.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_11892_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5186..5704)
DNA (519bp) protein (173aa)
CinA domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8K3_ALIDK rbh
CinA domain-containing protein; K03743 rbh
CinA domain protein {ECO:0000313|EMBL:AEB86728.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_11892_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5711..6238)
DNA (528bp) protein (176aa)
phosphatidylglycerophosphatase a; K01095 phosphatidylglycerophosphatase A [EC:3.1.3.27] rbh
Phosphatidylglycerophosphatase A {ECO:0000256|PIRNR:PIRNR006162}; EC=3.1.3.27 {ECO:0000256|PIRNR:PIRNR006162};; Phosphatidylglycerolphosphate phosphatase A {ECO:0000256|PIRNR:PIRNR006162}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Phosphatidylglycerophosphatase A n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVC9_ALIDB rbh
SCNpilot_expt_500_bf_scaffold_11892_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6248..7438)
DNA (1191bp) protein (397aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
acetate kinase; K00925 acetate kinase [EC:2.7.2.1] rbh
Acetate kinase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVC8_ALIDB rbh
SCNpilot_expt_500_bf_scaffold_11892_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7435..7656)
DNA (222bp) protein (74aa)
phosphate acetyltransferase (EC:2.3.1.8); K00625 phosphate acetyltransferase [EC:2.3.1.8]
Phosphate acetyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8K0_ALIDK
Phosphate acetyltransferase {ECO:0000313|EMBL:GAO20953.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_11892_12
unknown

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8263..8505
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_11892_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8814..9704)
DNA (891bp) protein (297aa)
ABC-2 type transporter n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVC6_ALIDB
ABC transporter; K09686 antibiotic transport system permease protein
ABC-2 type transporter {ECO:0000313|EMBL:ADV01771.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_11892_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9698..9931)
DNA (234bp) protein (78aa)
ABC-2 type transporter n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVC6_ALIDB
ABC transporter; K09686 antibiotic transport system permease protein
ABC-2 type transporter {ECO:0000313|EMBL:ADV01771.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_11892_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9928..12009)
DNA (2082bp) protein (694aa)
ABC transporter related protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVC5_ALIDB
ABC transporter related protein {ECO:0000313|EMBL:ADV01770.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
ABC transporter; K13926 ribosome-dependent ATPase
SCNpilot_expt_500_bf_scaffold_11892_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12628..14034)
DNA (1407bp) protein (469aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVC3_ALIDB
rnd efflux system, outer membrane lipoprotein, nodt family
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:ADV01768.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Displaying 16 items

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