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SCNpilot_expt_500_bf_scaffold_5390

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5390_1
Physcomitrella patens, Physcomitrella, Funariales, Funariidae, Streptophyta, Viridiplantae

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1129..1947
DNA (819bp) protein (273aa)
Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U852_PHYPA
Predicted protein {ECO:0000313|EMBL:EDQ48151.1}; Flags: Fragment;; TaxID=3218 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella.;" source="Physcomitrella patens subsp. patens (Moss).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5390_2
Burkholderia sp. MR1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1816..2469)
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DCX6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KIG08612.1}; TaxID=870478 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MR1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5390_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2530..3177)
DNA (648bp) protein (216aa)
ruvB; holliday junction DNA helicase ruvb; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCI0_ACIET
SCNpilot_expt_500_bf_scaffold_5390_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3123..3635)
DNA (513bp) protein (171aa)
Holliday junction ATP-dependent DNA helicase ruvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4K2_ALIDK
SCNpilot_expt_500_bf_scaffold_5390_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3694..4305
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4K1_ALIDK rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEB82964.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_5390_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4302..6155
DNA (1854bp) protein (618aa)
Putative heat-shock chaperone protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TX83_ALIDB rbh
heat-shock chaperone protein rbh
Putative heat-shock chaperone protein {ECO:0000313|EMBL:ADU98351.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_5390_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6152..8962
DNA (2811bp) protein (937aa)
DnaK-related protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TX82_ALIDB rbh
molecular chaperone DnaK rbh
DnaK-related protein {ECO:0000313|EMBL:ADU98350.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_5390_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8964..10049)
DNA (1086bp) protein (362aa)
Endoproteinase Arg-C n=2 Tax=Alicycliphilus denitrificans RepID=E8TX81_ALIDB rbh
endoproteinase ArgC rbh
Endoproteinase ArgC {ECO:0000313|EMBL:GAO26269.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_5390_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10416..10988)
DNA (573bp) protein (191aa)
holliday junction DNA helicase ruva; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] rbh
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Holliday junction ATP-dependent DNA helicase RuvA n=2 Tax=Alicycliphilus denitrificans RepID=E8TX80_ALIDB rbh
SCNpilot_expt_500_bf_scaffold_5390_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11036..11986
DNA (951bp) protein (317aa)
PhoH family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TX79_ALIDB rbh
PhoH family protein; K06217 phosphate starvation-inducible protein PhoH and related proteins rbh
Phosphate starvation-inducible protein PhoH {ECO:0000313|EMBL:GAO26267.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_5390_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12038..12490
DNA (453bp) protein (151aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Endoribonuclease YbeY n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TX78_ALIDB
hypothetical protein; K07042 probable rRNA maturation factor
SCNpilot_expt_500_bf_scaffold_5390_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12491..14023)
DNA (1533bp) protein (511aa)
o-succinylbenzoate--CoA ligase (EC:6.2.1.26); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
O-succinylbenzoate--CoA ligase {ECO:0000313|EMBL:AEB82957.1}; EC=6.2.1.26 {ECO:0000313|EMBL:AEB82957.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
O-succinylbenzoate--CoA ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4J4_ALIDK rbh
SCNpilot_expt_500_bf_scaffold_5390_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14087..16306)
DNA (2220bp) protein (740aa)
Quinone oxidoreductase, YhdH/YhfP family n=2 Tax=Alicycliphilus denitrificans RepID=E8TX76_ALIDB rbh
Quinone oxidoreductase, YhdH/YhfP family {ECO:0000313|EMBL:GAO26264.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
YhdH/YhfP family quinone oxidoreductase rbh
SCNpilot_expt_500_bf_scaffold_5390_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16326..17297)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4J1_ALIDK rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEB82954.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_5390_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17402..18349
DNA (948bp) protein (316aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TX73_ALIDB rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEB82953.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_5390_16
unknown

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comp(18536..18796)
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5390_17
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19149..20291
DNA (1143bp) protein (381aa)
cell division protein Fic n=1 Tax=Rhizobium leguminosarum RepID=UPI00036C0A72 rbh
Cell division protein Fic {ECO:0000313|EMBL:KEQ03489.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
filamentation induced by cAMP protein Fic rbh
SCNpilot_expt_500_bf_scaffold_5390_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20312..20770)
DNA (459bp) protein (153aa)
d-tyrosyl-tRNA(tyr) deacylase; K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-]
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TX71_ALIDB
SCNpilot_expt_500_bf_scaffold_5390_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20813..21652)
DNA (840bp) protein (280aa)
Cation diffusion facilitator family transporter n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4I7_ALIDK
cation diffusion facilitator family transporter
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:AEB82950.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_5390_20
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21756..23507
DNA (1752bp) protein (584aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4I6_ALIDK rbh
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
PAS/PAC sensor-containing diguanylate cyclase {ECO:0000313|EMBL:GAO26257.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Displaying 20 items

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