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SCNpilot_expt_500_bf_scaffold_5426

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5426_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..2073
DNA (2073bp) protein (691aa)
TonB-dependent receptor n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6V2_ALIDK rbh
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
TonB-dependent receptor {ECO:0000313|EMBL:GAO25178.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_5426_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2154..3344
DNA (1191bp) protein (397aa)
Diguanylate cyclase n=2 Tax=Alicycliphilus denitrificans RepID=E8TTM3_ALIDB rbh
diguanylate cyclase rbh
Diguanylate cyclase {ECO:0000313|EMBL:AEB86562.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_5426_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3335..4006)
DNA (672bp) protein (224aa)
Phosphoglycerate mutase n=2 Tax=Alicycliphilus denitrificans RepID=E8TTM2_ALIDB rbh
phosphoglycerate mutase rbh
Phosphoglycerate mutase {ECO:0000313|EMBL:GAO25175.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_5426_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4078..5205)
DNA (1128bp) protein (376aa)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Alicycliphilus denitrificans RepID=E8TTM1_ALIDB rbh
short-chain dehydrogenase/reductase sdr rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADV01607.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_5426_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5202..5348)
DNA (147bp) protein (49aa)
Extracellular ligand-binding receptor n=2 Tax=Alicycliphilus denitrificans RepID=E8TTM0_ALIDB
uncharacterized LOC100496887
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADV01606.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_5426_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5318..6379)
DNA (1062bp) protein (354aa)
Extracellular ligand-binding receptor n=2 Tax=Alicycliphilus denitrificans RepID=E8TTM0_ALIDB rbh
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:AEB86559.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_5426_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6402..7490)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTL9_ALIDB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADV01605.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_5426_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7560..8618)
DNA (1059bp) protein (353aa)
pyridoxal-5'-phosphate-dependent protein beta subunit; K01754 threonine dehydratase [EC:4.3.1.19]
Pyridoxal-5'-phosphate-dependent protein beta subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTL8_ALIDB
Pyridoxal-5'-phosphate-dependent protein subunit beta {ECO:0000313|EMBL:GAO25171.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_5426_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8692..9534)
DNA (843bp) protein (281aa)
UPI0003D3BED8 related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003D3BED8 rbh
Predicted epimerase, PhzC/PhzF homolog {ECO:0000313|EMBL:GAD24417.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
phenazine biosynthesis protein, PhzC/PhzF family
SCNpilot_expt_500_bf_scaffold_5426_10
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9621..9905)
DNA (285bp) protein (95aa)
Glutathione S-transferase domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T4V9_ACIDE
Glutathione S-transferase domain protein {ECO:0000313|EMBL:EER60470.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
glutathione S-transferase domain-containing protein
SCNpilot_expt_500_bf_scaffold_5426_11
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10232..10624)
DNA (393bp) protein (131aa)
GntR family transcriptional regulator (EC:2.6.1.7)
2-aminoadipate aminotransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000367059F
Transcriptional regulator {ECO:0000313|EMBL:GAD24418.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Displaying 11 items

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