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SCNpilot_expt_500_bf_scaffold_5897

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5897_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7..1248)
DNA (1242bp) protein (414aa)
polynucleotide adenylyltransferase; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] rbh
Multifunctional CCA protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXA3_ALIDB rbh
Multifunctional CCA protein {ECO:0000256|HAMAP-Rule:MF_01261, ECO:0000256|SAAS:SAAS00054545}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_5897_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1271..2038)
DNA (768bp) protein (256aa)
Metallophosphoesterase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4M6_ALIDK rbh
metallophosphoesterase rbh
Metallophosphoesterase {ECO:0000313|EMBL:AEB82989.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_5897_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2057..2743)
DNA (687bp) protein (229aa)
glutathione S-transferase domain-containing protein; K04097 glutathione S-transferase [EC:2.5.1.18] rbh
Glutathione S-transferase domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXA9_ALIDB rbh
Glutathione S-transferase domain-containing protein {ECO:0000313|EMBL:GAO26298.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_5897_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2817..3389)
DNA (573bp) protein (191aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Alicycliphilus denitrificans RepID=E8TXB0_ALIDB rbh
5-formyltetrahydrofolate cyclo-ligase rbh
SCNpilot_expt_500_bf_scaffold_5897_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3404..5218
DNA (1815bp) protein (605aa)
lytic transglycosylase catalytic subunit; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] rbh
Lytic transglycosylase catalytic n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4M9_ALIDK rbh
Lytic transglycosylase catalytic {ECO:0000313|EMBL:AEB82992.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_5897_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5164..5325
DNA (162bp) protein (54aa)
lytic transglycosylase catalytic; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-]
Lytic transglycosylase catalytic n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4M9_ALIDK
Lytic transglycosylase catalytic {ECO:0000313|EMBL:AEB82992.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_5897_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5432..5959)
DNA (528bp) protein (176aa)
Cytochrome b561 n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4N0_ALIDK rbh
cytochrome b561 rbh
Cytochrome b561 {ECO:0000313|EMBL:AEB82993.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_5897_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5959..6225)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXB3_ALIDB
hypothetical protein
Signal peptide protein {ECO:0000313|EMBL:GAO26302.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_5897_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6236..6919)
DNA (684bp) protein (228aa)
PKHD-type hydroxylase ybiX; K07336 PKHD-type hydroxylase [EC:1.14.11.-] rbh
PKHD-type hydroxylase Alide2_0579 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
PKHD-type hydroxylase Alide2_0579 n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4N2_ALIDK rbh
SCNpilot_expt_500_bf_scaffold_5897_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6913..7188)
DNA (276bp) protein (92aa)
fmn-dependent alpha-hydroxy acid dehydrogenase; K00104 glycolate oxidase [EC:1.1.3.15]
(S)-2-hydroxy-acid oxidase {ECO:0000313|EMBL:AEB82996.1}; EC=1.1.3.15 {ECO:0000313|EMBL:AEB82996.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
FMN-dependent alpha-hydroxy acid dehydrogenase n=2 Tax=Alicycliphilus denitrificans RepID=E8TXB5_ALIDB
SCNpilot_expt_500_bf_scaffold_5897_11
Marinobacter similis, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8016..10196)
DNA (2181bp) protein (727aa)
TonB-dependent receptor n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXB6_ALIDB
TonB-denpendent receptor {ECO:0000313|EMBL:AHI28291.1}; TaxID=1420916 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter similis.;"
tonb-dependent receptor; K02014 iron complex outermembrane recepter protein
Displaying 11 items

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