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SCNpilot_expt_500_bf_scaffold_4122

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4122_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..483
DNA (483bp) protein (161aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Uncharacterized peroxidase-related enzyme n=2 Tax=Alicycliphilus denitrificans RepID=E8U185_ALIDB rbh
peroxidase-like protein rbh
SCNpilot_expt_500_bf_scaffold_4122_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(468..1304)
DNA (837bp) protein (279aa)
Chromosome segregation and condensation protein ScpA n=2 Tax=Alicycliphilus denitrificans RepID=E8U184_ALIDB rbh
chromosome segregation and condensation protein ScpA; K05896 segregation and condensation protein A rbh
Segregation and condensation protein A {ECO:0000256|SAAS:SAAS00093938}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_4122_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1451..1666)
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0T5_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO24756.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_4122_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1712..2212
DNA (501bp) protein (167aa)
Putative lipoprotein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0T4_ALIDB rbh
lipoprotein rbh
Lipoprotein {ECO:0000313|EMBL:GAO24755.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_4122_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2226..3887)
DNA (1662bp) protein (554aa)
acetolactate synthase (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] rbh
Acetolactate synthase {ECO:0000313|EMBL:AEB83428.1}; EC=2.2.1.6 {ECO:0000313|EMBL:AEB83428.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Acetolactate synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GA73_ALIDK rbh
SCNpilot_expt_500_bf_scaffold_4122_6
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3956..5107)
DNA (1152bp) protein (384aa)
FMN-dependent alpha-hydroxy acid dehydrogenase; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] rbh
FMN-dependent alpha-hydroxy acid dehydrogenase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WBH5_ACISJ rbh
FMN-dependent alpha-hydroxy acid dehydrogenase {ECO:0000313|EMBL:ABM43600.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_4122_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5104..6426)
DNA (1323bp) protein (441aa)
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GA75_ALIDK
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein; K07077
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein {ECO:0000313|EMBL:AEB83430.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_4122_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6762..7778
DNA (1017bp) protein (339aa)
Helix-turn-helix-domain containing protein AraC type n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U0T0_ALIDB rbh
AraC family transcriptional regulator rbh
Helix-turn-helix-domain containing protein AraC type {ECO:0000313|EMBL:ADV01131.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_4122_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7867..8436)
DNA (570bp) protein (190aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
pyridoxal kinase (EC:2.7.1.35); K00868 pyridoxine kinase [EC:2.7.1.35]
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035C2EB7
SCNpilot_expt_500_bf_scaffold_4122_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8497..8691)
DNA (195bp) protein (65aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
pdxK; pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase (EC:2.7.1.35); K00868 pyridoxine kinase [EC:2.7.1.35]
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035C2EB7
SCNpilot_expt_500_bf_scaffold_4122_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8688..9404)
DNA (717bp) protein (239aa)
glutamine amidotransferase class-I; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] rbh
Glutamine amidotransferase class-I n=2 Tax=Alicycliphilus denitrificans RepID=E8U0S9_ALIDB rbh
Glutamine amidotransferase {ECO:0000313|EMBL:GAO24750.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_4122_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9477..10097)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003612194 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD23603.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
lysine exporter protein LysE/YggA
Displaying 12 items

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