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SCNpilot_expt_500_bf_scaffold_6300_13

Organism: SCNPILOT_EXPT_300_BF_Alicycliphilus_69_12

partial RP 20 / 55 MC: 2 BSCG 25 / 51 MC: 2 ASCG 9 / 38
Location: comp(15510..15944)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BW90_DELAS similarity UNIREF
DB: UNIREF100
  • Identity: 89.5
  • Coverage: 143.0
  • Bit_score: 242
  • Evalue 2.80e-61
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 89.5
  • Coverage: 143.0
  • Bit_score: 242
  • Evalue 8.70e-62
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:KFJ09080.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.5
  • Coverage: 143.0
  • Bit_score: 242
  • Evalue 3.90e-61

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Taxonomy

Delftia acidovorans → Delftia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 435
CGCCGCCGGCTGAACCATGCCGGCGACGCGGCCGACCTGGCGCAGGACACCTTCGTGCGCCTGCTCACCGCCCCTGCCGCGCCGGCCGAAGCCCCGCTGCGCGAGCCGCGCGCCTACCTGGCCACGGTGGCGCGGCGGCTGCTGCTCAACCACCTGCGCCGCCAGTCGCTGGAGCAGGCCTACCTGCAGGCGCTGGCCGCGCTGCCCGCGCCCCAGGCGCCGTCGCCCGAGCAGCAACTGGCGATCCTGCAGGCGCTGCAGGAGATCGACGCCATGCTCGACGGCCTGCCGCCCAAGGTGCGCGCGGTCTTCATCCTGTCCCAGGTCGAGGGGCTGACCTATGCGGCCATCGCCGAGGAGCTGGGCATGGGCCTGCGTTCGGTCAAGCGCTACATGGCCCAGGCCATGGCCGAATGCATTCTGCTGGCGCCATGA
PROTEIN sequence
Length: 145
RRRLNHAGDAADLAQDTFVRLLTAPAAPAEAPLREPRAYLATVARRLLLNHLRRQSLEQAYLQALAALPAPQAPSPEQQLAILQALQEIDAMLDGLPPKVRAVFILSQVEGLTYAAIAEELGMGLRSVKRYMAQAMAECILLAP*