ggKbase home page

SCNpilot_expt_500_bf_scaffold_6300

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_6300_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..560)
DNA (558bp) protein (186aa)
phosphonate-transporting ATPase (EC:3.6.3.28); K05685 macrolide transport system ATP-binding/permease protein [EC:3.6.3.-]
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003721FBE rbh
ABC-type antimicrobial peptide transport system, permease component {ECO:0000313|EMBL:GAD23465.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_500_bf_scaffold_6300_2
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

569..1063
DNA (495bp) protein (165aa)
Putative glutamate binding periplasmic protein n=1 Tax=Streptomyces sp. Tu6071 RepID=F3ZCA1_9ACTO
hypothetical protein
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
SCNpilot_expt_500_bf_scaffold_6300_3
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1422..2600)
DNA (1179bp) protein (393aa)
Macrolide-specific efflux protein MacA n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WMJ6_DELAC rbh
Macrolide-specific efflux protein MacA {ECO:0000313|EMBL:EPD33892.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
RND family efflux transporter MFP subunit; K13888 macrolide-specific efflux protein MacA rbh
SCNpilot_expt_500_bf_scaffold_6300_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2867..5245)
DNA (2379bp) protein (793aa)
TonB-dependent siderophore receptor n=1 Tax=Comamonas testosteroni S44 RepID=D8DCN2_COMTE rbh
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EFI59408.1}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_bf_scaffold_6300_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5347..6075)
DNA (729bp) protein (243aa)
iron dicitrate transport regulator FecR n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000361CF45 rbh
Fe2+-dicitrate sensor, membrane component {ECO:0000313|EMBL:GAD23458.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
anti-FecI sigma factor FecR rbh
SCNpilot_expt_500_bf_scaffold_6300_6
unknown

Not on your lists

6201..6656
DNA (456bp) protein (152aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_6300_7
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6721..9246)
DNA (2526bp) protein (842aa)
TonB-dependent siderophore receptor n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AY70_DELSC rbh
TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KFJ11602.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_bf_scaffold_6300_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9424..9759
DNA (336bp) protein (112aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TSL4_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO22921.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_6300_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9761..10375
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TSL5_ALIDB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADV00351.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_6300_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10523..11386)
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003751673 rbh
Fe2+-dicitrate sensor, membrane component {ECO:0000313|EMBL:GAD23456.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
anti-FecI sigma factor FecR; K07165 transmembrane sensor rbh
SCNpilot_expt_500_bf_scaffold_6300_11
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11423..14422)
DNA (3000bp) protein (1000aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WZY7_DELAC rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD43495.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
fhuE4; outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_500_bf_scaffold_6300_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14521..15513)
DNA (993bp) protein (331aa)
Anti-FecI sigma factor, FecR n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AY80_DELSC rbh
FecR family protein {ECO:0000313|EMBL:KFJ08935.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
anti-FecI sigma factor FecR; K07165 transmembrane sensor rbh
SCNpilot_expt_500_bf_scaffold_6300_13
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15510..15944)
DNA (435bp) protein (145aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BW90_DELAS
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:KFJ09080.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
Displaying 13 items

View Taxonomy