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SCNpilot_expt_500_bf_scaffold_4421

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4421_1
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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3..1274
DNA (1272bp) protein (424aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LI81_HALO1
TPR domain protein, putative component of TonB system {ECO:0000313|EMBL:AKF09127.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4421_2
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1271..2443
DNA (1173bp) protein (391aa)
Adventurous gliding protein T n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08XQ6_STIAD
TPR repeat protein {ECO:0000313|EMBL:AKF09118.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
aglT; adventurous gliding protein T
SCNpilot_expt_500_bf_scaffold_4421_3
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2440..2943
DNA (504bp) protein (168aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF09117.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
SCNpilot_expt_500_bf_scaffold_4421_4
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2976..3854
DNA (879bp) protein (293aa)
Dyp-type peroxidase n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0A8R5_COLFT
Putative dye-decolorizing peroxidase (DyP), YfeX-like subgroup {ECO:0000313|EMBL:KFE63752.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
Dyp-type peroxidase; K07223 putative iron-dependent peroxidase
SCNpilot_expt_500_bf_scaffold_4421_5
unknown

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comp(3878..4237)
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4421_6
CG_CPR15_01, CG_CPR15, Bacteria

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5194..6063
DNA (870bp) protein (290aa)
elongation factor G; K02355 elongation factor G
Elongation factor G id=1991202 bin=GWE2_CPR3_35_7 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_CPR3_35_7 organism_group=CPR3 organism_desc=Good
Tax=CG_CPR15_01
SCNpilot_expt_500_bf_scaffold_4421_7
unknown

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comp(6156..6809)
DNA (654bp) protein (218aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4421_8
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6899..7624)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G8V3_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN99074.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCNpilot_expt_500_bf_scaffold_4421_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7624..8232)
DNA (609bp) protein (203aa)
ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FYE7_SORC5
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
ECF-family RNA polymerase sigma factor {ECO:0000313|EMBL:CAN95611.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCNpilot_expt_500_bf_scaffold_4421_10
unknown

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comp(8274..9257)
DNA (984bp) protein (328aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4421_11
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10810..11892
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y1Q7_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP38709.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCNpilot_expt_500_bf_scaffold_4421_12
unknown

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11893..13023
DNA (1131bp) protein (377aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4421_13
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13070..13621)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GSU9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EYF04178.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4421_14
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14094..14528)
DNA (435bp) protein (145aa)
LysR family transcriptional regulator (EC:4.2.1.1)
Transcriptional regulator, LysR family n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PFJ0_9DELT
Transcriptional regulator, LysR family protein {ECO:0000313|EMBL:KFE62908.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
SCNpilot_expt_500_bf_scaffold_4421_15
unknown

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15085..15240
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4421_16
unknown

Not on your lists

16438..16959
DNA (522bp) protein (174aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4421_17
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16956..17300
DNA (345bp) protein (115aa)
Transposase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GG21_SORC5
transposase
Transposase {ECO:0000313|EMBL:CAN96265.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCNpilot_expt_500_bf_scaffold_4421_18
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17386..19113
DNA (1728bp) protein (576aa)
Uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q090X5_STIAD rbh
transposase, is66 family rbh
Transposase, IS66 family {ECO:0000313|EMBL:ADO70269.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
SCNpilot_expt_500_bf_scaffold_4421_19
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18996..19373)
DNA (378bp) protein (126aa)
Integrase, catalytic region n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3M1_GEOUR
integrase catalytic subunit
Integrase, catalytic region {ECO:0000313|EMBL:ABQ26389.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
SCNpilot_expt_500_bf_scaffold_4421_20
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19343..19993)
DNA (651bp) protein (217aa)
Hypothetical transposase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FPG7_SORC5
transposase
Hypothetical transposase {ECO:0000313|EMBL:CAN92057.1}; Transposase {ECO:0000313|EMBL:CAN96275.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCNpilot_expt_500_bf_scaffold_4421_21
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19990..20145)
DNA (156bp) protein (52aa)
Transposase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FPH0_SORC5
transposase
Transposase {ECO:0000313|EMBL:CAN92058.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCNpilot_expt_500_bf_scaffold_4421_22
unknown

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20882..21748
DNA (867bp) protein (289aa)
putative rhs-related protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745BE5
Displaying 22 items

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