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SCNpilot_expt_500_bf_scaffold_2353

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2353_1
Neochlamydia sp. TUME1, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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2..646
DNA (645bp) protein (215aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=1478174 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. TUME1.;"
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase; K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] rbh
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Parachlamydia acanthamoebae (strain UV7) RepID=F8KYA1_PARAV rbh
SCNpilot_expt_500_bf_scaffold_2353_2
Neochlamydia sp. EPS4, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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663..2012
DNA (1350bp) protein (450aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=1478175 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. EPS4.;"
murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase murD; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] rbh
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Parachlamydia acanthamoebae (strain UV7) RepID=F8KYA0_PARAV rbh
SCNpilot_expt_500_bf_scaffold_2353_3
Neochlamydia sp. EPS4, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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2139..2759
DNA (621bp) protein (207aa)
Putative muropeptidase (Autolysin) n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MBS5_PARUW
Uncharacterized protein {ECO:0000313|EMBL:KIC73113.1}; TaxID=1478175 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. EPS4.;"
lytF; muropeptidase (autolysin)
SCNpilot_expt_500_bf_scaffold_2353_4
Neochlamydia sp. EPS4, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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2823..3959
DNA (1137bp) protein (379aa)
Putative cell division protein ftsW n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MBS6_PARUW rbh
Lipid II flippase FtsW {ECO:0000313|EMBL:KIC73112.1}; TaxID=1478175 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. EPS4.;"
ftsW; cell division protein ftsW; K03588 cell division protein FtsW rbh
SCNpilot_expt_500_bf_scaffold_2353_5
Neochlamydia sp. TUME1, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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4011..5111
DNA (1101bp) protein (367aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=1478174 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. TUME1.;"
murG; UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG; K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] rbh
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=MURG_PARUW rbh
SCNpilot_expt_500_bf_scaffold_2353_6
unknown

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5445..6629
DNA (1185bp) protein (395aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2353_7
Neochlamydia sp. EPS4, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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7017..9440
DNA (2424bp) protein (808aa)
Bifunctional enzyme MurC/Ddl {ECO:0000313|EMBL:KIC73232.1}; EC=6.3.2.4 {ECO:0000313|EMBL:KIC73232.1};; EC=6.3.2.8 {ECO:0000313|EMBL:KIC73232.1};; TaxID=1478175 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. EPS4.;"
murC_ddl; bifunctional enzyme MurC/Ddl; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4]; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] rbh
Bifunctional enzyme MurC/Ddl n=1 Tax=Parachlamydia acanthamoebae (strain UV7) RepID=F8KZE5_PARAV rbh
SCNpilot_expt_500_bf_scaffold_2353_8
Prochlorococcus sp. MIT 0801, Prochlorococcus, Prochlorales, Cyanobacteria, Bacteria

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9425..10507
DNA (1083bp) protein (361aa)
Putative glycosyl-transferase {ECO:0000313|EMBL:AIQ97728.1}; TaxID=1501269 species="Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.;" source="Prochlorococcus sp. MIT 0801.;"
group 1 glycosyl transferase id=5240573 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
group 1 glycosyl transferase
SCNpilot_expt_500_bf_scaffold_2353_9
Neochlamydia sp. EPS4, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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10593..11234
DNA (642bp) protein (214aa)
Uncharacterized protein n=2 Tax=Parachlamydia acanthamoebae RepID=F8KZE7_PARAV
Uncharacterized protein {ECO:0000313|EMBL:KIC73231.1}; TaxID=1478175 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. EPS4.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2353_10
unknown

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11231..11467
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2353_11
Parachlamydia acanthamoebae, Parachlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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11522..11872
DNA (351bp) protein (117aa)
Protein CutA, chloroplastic n=2 Tax=Parachlamydia acanthamoebae RepID=F8KZE8_PARAV
cUTA; protein CutA; K03926 periplasmic divalent cation tolerance protein
Protein CutA, chloroplastic {ECO:0000313|EMBL:CCB86288.1}; TaxID=765952 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Parachlamydia.;" source="Parachlamydia acanthamoebae (strain UV7).;"
SCNpilot_expt_500_bf_scaffold_2353_12
Neochlamydia sp. EPS4, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

12103..12333
DNA (231bp) protein (77aa)
UPF0109 protein PUV_13390 n=2 Tax=Parachlamydia acanthamoebae RepID=F8KZE9_PARAV
UPF0109 protein DB42_CE00350 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1478175 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. EPS4.;"
hypothetical protein; K06960
SCNpilot_expt_500_bf_scaffold_2353_13
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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12500..12871
DNA (372bp) protein (124aa)
Single-stranded DNA-binding protein n=1 Tax=Parachlamydia acanthamoebae (strain UV7) RepID=F8KZF0_PARAV
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
ssb-p; prophage-derived single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein
SCNpilot_expt_500_bf_scaffold_2353_14
Candidatus Protochlamydia amoebophila, Candidatus Protochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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12963..13319
DNA (357bp) protein (119aa)
Anti-sigma factor antagonist n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MBT1_PARUW
spoIiaa; sigma regulatory factor
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=362787 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Candidatus Protochlamydia.;" source="Candidatus Protochlamydia amoebophila.;"
SCNpilot_expt_500_bf_scaffold_2353_15
Neochlamydia sp. EPS4, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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13934..14269
DNA (336bp) protein (112aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1478175 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. EPS4.;"
miaA; tRNA dimethylaLLyltransferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75]
tRNA dimethylallyltransferase n=2 Tax=Parachlamydia acanthamoebae RepID=F8KZF2_PARAV
Displaying 15 items

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