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SCNpilot_expt_500_bf_scaffold_3442

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3442_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..138
DNA (138bp) protein (46aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
D-alanine--D-alanine ligase n=1 Tax=alpha proteobacterium HIMB5 RepID=J9YVG8_9PROT
D-alanine--D-alanine ligase
SCNpilot_expt_500_bf_scaffold_3442_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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105..845
DNA (741bp) protein (247aa)
Cell division protein FtsQ n=1 Tax=Oceanibaculum indicum P24 RepID=K2KF51_9PROT
Cell division protein FtsQ {ECO:0000256|HAMAP-Rule:MF_00911, ECO:0000256|SAAS:SAAS00006985}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
cell division protein FtsQ; K03589 cell division protein FtsQ
SCNpilot_expt_500_bf_scaffold_3442_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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927..2201
DNA (1275bp) protein (425aa)
Cell division protein ftsA n=1 Tax=Oceanibaculum indicum P24 RepID=K2K002_9PROT rbh
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ftsA; cell division protein FtsA; K03590 cell division protein FtsA rbh
SCNpilot_expt_500_bf_scaffold_3442_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2277..3737
DNA (1461bp) protein (487aa)
Cell division protein FtsZ n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9TL19_PHAFV rbh
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
cell division GTPase; K03531 cell division protein FtsZ
SCNpilot_expt_500_bf_scaffold_3442_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3836..4114
DNA (279bp) protein (93aa)
GCN5-like N-acetyltransferase n=1 Tax=Bacillus alcalophilus ATCC 27647 RepID=J8TEJ8_BACAO
Uncharacterized protein {ECO:0000313|EMBL:AIL12704.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
GCN5-like N-acetyltransferase
SCNpilot_expt_500_bf_scaffold_3442_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4114..4233
DNA (120bp) protein (40aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12704.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_3442_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4267..4398
DNA (132bp) protein (44aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12704.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_3442_8
R_Gammaproteobacteria_36_30, Gammaproteobacteria, Proteobacteria, Bacteria

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4502..5476
DNA (975bp) protein (325aa)
birA; biotin operon repressor (EC:6.3.4.15); K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin operon repressor n=6 Tax=Coxiella burnetii RepID=A9KG76_COXBN
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_36_30_curated
SCNpilot_expt_500_bf_scaffold_3442_9
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5473..6816)
DNA (1344bp) protein (448aa)
Biotin carboxylase {ECO:0000313|EMBL:BAQ17704.1}; EC=6.3.4.14 {ECO:0000313|EMBL:BAQ17704.1};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
accC1; acetyl-CoA carboxylase biotin carboxylase subunit (EC:6.3.4.14); K11263 acetyl-/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.3.4.14]
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI000370C248
SCNpilot_expt_500_bf_scaffold_3442_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7343..7594)
DNA (252bp) protein (84aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12705.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_3442_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7587..7991)
DNA (405bp) protein (135aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hemB; delta-aminolevulinic acid dehydratase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24]
Delta-aminolevulinic acid dehydratase n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T3H1_JANMA
Displaying 11 items

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