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SCNpilot_expt_500_bf_scaffold_10846

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_10846_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..499)
DNA (498bp) protein (166aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Topoisomerase IV subunit A (EC:5.99.1.-)
DNA topoisomerase 4 subunit A n=1 Tax=Micavibrio aeruginosavorus EPB RepID=M4VEU9_9PROT
SCNpilot_expt_500_bf_scaffold_10846_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(529..990)
DNA (462bp) protein (154aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
DNA topoisomerase IV subunit A; K02621 topoisomerase IV subunit A [EC:5.99.1.-]
DNA topoisomerase 4 subunit A n=1 Tax=Oceanibaculum indicum P24 RepID=K2JJ72_9PROT
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_500_bf_scaffold_10846_1].
SCNpilot_expt_500_bf_scaffold_10846_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1798..2697)
DNA (900bp) protein (300aa)
LysR family transcriptional regulator n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225BD8C
Uncharacterized protein {ECO:0000313|EMBL:AIL13547.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_10846_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2949..3557)
DNA (609bp) protein (203aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
UPI00019278EF related cluster id=4920984 bin=GWC2_Alphaproteobacteria_42_16 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
similar to superoxide dismutase
SCNpilot_expt_500_bf_scaffold_10846_5
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3598..4050)
DNA (453bp) protein (151aa)
Putative outer membrane lipoprotein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LEY5_9PROT
Putative outer membrane lipoprotein {ECO:0000313|EMBL:EKF07530.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
putative outer membrane lipoprotein
SCNpilot_expt_500_bf_scaffold_10846_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4195..4443
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2ET64_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL13549.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_10846_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4412..4876
DNA (465bp) protein (155aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13549.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_10846_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4886..5497
DNA (612bp) protein (204aa)
Phosphoheptose isomerase {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089180};; Sedoheptulose 7-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00067}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Phosphoheptose isomerase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TID2_TISMK
gmhA; phosphoheptose isomerase
SCNpilot_expt_500_bf_scaffold_10846_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5507..6532
DNA (1026bp) protein (342aa)
ADP-heptose synthase; K03272 D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
Bifunctional protein HldE n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZAV2_9PROT
Bifunctional protein HldE {ECO:0000256|HAMAP-Rule:MF_01603, ECO:0000256|SAAS:SAAS00015122}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Displaying 9 items

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