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SCNPILOT_CONT_300_BF_Mesorhizobium_65_39

SCNPILOT_EXPT_500_BF_STEP10_Mesorhizobium_65_3
In projects: SCNPILOT_EXPT_500_BF_STEP10

Consensus taxonomy: Mesorhizobium  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 3.46 Longest contig: 6.89 Kbp Bin length: 461.69 Kbp GC content: 64.92 %
Contigs count: 304 Features count: 683 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 1 / 55 BSCG 2 / 51 ASCG 1 / 38
Displaying items 101-150 of 304 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_31723
Species: Mesorhizobium metallidurans (50%)
2 1108 bp 63.45 3.16 81.77
SCNpilot_expt_500_bf_scaffold_33228
Species: Mesorhizobium sp. SOD10 (50%)
2 1032 bp 64.24 4.36 100.00
SCNpilot_expt_500_bf_scaffold_33486
Species: Mesorhizobium australicum (50%)
2 1019 bp 63.98 3.43 87.73
SCNpilot_expt_500_bf_scaffold_28880
Species: Mesorhizobium loti (50%)
2 1245 bp 62.09 2.61 89.40
SCNpilot_expt_500_bf_scaffold_30209
Species: Mesorhizobium sp. ORS3359 (50%)
2 1185 bp 69.03 3.80 97.47
SCNpilot_expt_500_bf_scaffold_44260
Species: Bosea sp. LC85 (50%)
2 1334 bp 58.55 4.12 71.96
SCNpilot_expt_500_bf_scaffold_20586
Species: Verminephrobacter eiseniae (50%)
2 1717 bp 65.40 2.62 100.29
SCNpilot_expt_500_bf_scaffold_27798
Species: Hoeflea sp. BAL378 (50%)
2 1296 bp 62.81 3.47 76.16
SCNpilot_expt_500_bf_scaffold_26966
Species: Mesorhizobium plurifarium (50%)
2 1333 bp 66.24 4.50 100.15
SCNpilot_expt_500_bf_scaffold_26204
Species: Mesorhizobium sp. LSJC285A00 (50%)
2 1368 bp 64.11 4.20 85.31
SCNpilot_expt_500_bf_scaffold_23173
Species: Mesorhizobium sp. LNHC229A00 (50%)
2 1536 bp 66.67 3.58 96.68
SCNpilot_expt_500_bf_scaffold_31752
Species: Mesorhizobium ciceri (50%)
2 1106 bp 64.38 2.94 72.15
SCNpilot_expt_500_bf_scaffold_26468
Species: Mesorhizobium plurifarium (100%)
2 1355 bp 64.13 2.21 77.71
SCNpilot_expt_500_bf_scaffold_22161
Species: Mesorhizobium sp. LNJC395A00 (50%)
2 1602 bp 63.48 3.90 94.01
SCNpilot_expt_500_bf_scaffold_33778
Species: Mesorhizobium amorphae (50%)
2 1005 bp 66.27 2.99 67.46
SCNpilot_expt_500_bf_scaffold_22162
Species: Skermanella aerolata (50%)
2 1602 bp 59.80 2.18 58.05
SCNpilot_expt_500_bf_scaffold_27820
Species: Mesorhizobium ciceri (50%)
2 1295 bp 66.18 2.90 90.81
SCNpilot_expt_500_bf_scaffold_41328
Species: Mesorhizobium sp. L2C084A000 (50%)
2 1282 bp 63.96 3.71 99.92
SCNpilot_expt_500_bf_scaffold_33020
Species: Mesorhizobium sp. LNHC232B00 (50%)
2 1042 bp 68.23 4.32 84.64
SCNpilot_expt_500_bf_scaffold_29527
Species: Mesorhizobium opportunistum (50%)
2 1216 bp 67.27 3.08 96.96
SCNpilot_expt_500_bf_scaffold_24439
Species: Mesorhizobium australicum (100%)
2 1465 bp 67.51 4.78 99.11
SCNpilot_expt_500_bf_scaffold_21719
Species: Bradyrhizobium sp. LTSPM299 (50%)
2 1634 bp 65.67 4.59 99.88
SCNpilot_expt_500_bf_scaffold_33539
Species: Mesorhizobium sp. LSHC426A00 (50%)
2 1016 bp 56.10 2.95 44.59
SCNpilot_expt_500_bf_scaffold_29788
Species: Mesorhizobium loti (50%)
2 1204 bp 63.54 4.57 68.27
SCNpilot_expt_500_bf_scaffold_42930
Species: Tolypothrix campylonemoides (50%)
2 1289 bp 61.60 3.10 71.92
SCNpilot_expt_500_bf_scaffold_26749
Species: Mesorhizobium sp. LNHC209A00 (50%)
2 1343 bp 67.39 3.16 91.14
SCNpilot_expt_500_bf_scaffold_33799
Species: Mesorhizobium sp. L2C085B000 (50%)
2 1004 bp 65.44 4.48 86.35
SCNpilot_expt_500_bf_scaffold_28170
Species: Mesorhizobium sp. SOD10 (50%)
2 1278 bp 64.08 3.91 83.80
SCNpilot_expt_500_bf_scaffold_21218
Species: Mesorhizobium amorphae (50%)
2 1669 bp 71.78 3.59 103.35
SCNpilot_expt_500_bf_scaffold_32662
Species: Mesorhizobium alhagi (100%)
2 1059 bp 64.21 2.83 100.00
SCNpilot_expt_500_bf_scaffold_29799
Species: Burkholderia sp. AU4i (50%)
2 1203 bp 54.03 2.70 88.28
SCNpilot_expt_500_bf_scaffold_21479
Species: Rhizobium sp. CF142 (50%)
2 1652 bp 68.04 3.18 91.71
SCNpilot_expt_500_bf_scaffold_30786
Species: Mesorhizobium sp. SOD10 (100%)
2 1157 bp 65.25 4.11 94.90
SCNpilot_expt_500_bf_scaffold_43035
Species: Mesorhizobium sp. ORS3359 (50%)
2 1259 bp 64.89 3.57 85.54
SCNpilot_expt_500_bf_scaffold_25634
Species: Mesorhizobium sp. ORS3324 (50%)
2 1396 bp 66.98 2.87 76.72
SCNpilot_expt_500_bf_scaffold_25890
Species: GWE2_CPR3_35_7 (50%)
2 1382 bp 69.46 2.71 100.29
SCNpilot_expt_500_bf_scaffold_29803
Species: Mesorhizobium sp. STM 4661 (50%)
2 1203 bp 66.83 3.33 99.50
SCNpilot_expt_500_bf_scaffold_32668
Species: Mesorhizobium sp. ORS3359 (100%)
2 1058 bp 67.39 3.31 80.25
SCNpilot_expt_500_bf_scaffold_26509
Species: Pseudomonas bauzanensis (50%)
2 1354 bp 57.24 2.03 85.75
SCNpilot_expt_500_bf_scaffold_20903
Species: Desulfovibrio sp. FW1012B (50%)
2 1693 bp 63.85 3.25 94.80
SCNpilot_expt_500_bf_scaffold_25640
Species: Mesorhizobium sp. LNHC252B00 (50%)
2 1395 bp 61.65 2.87 87.53
SCNpilot_expt_500_bf_scaffold_32420
Species: Mesorhizobium sp. LSHC420B00 (50%)
2 1071 bp 62.28 2.80 59.66
SCNpilot_expt_500_bf_scaffold_26517
Species: Roseovarius sp. 217 (50%)
2 1354 bp 66.32 3.32 95.72
SCNpilot_expt_500_bf_scaffold_29048
Species: Mesorhizobium metallidurans (100%)
2 1237 bp 64.75 4.04 90.22
SCNpilot_expt_500_bf_scaffold_32680
Species: Mesorhizobium sp. LSHC420B00 (50%)
2 1058 bp 53.88 4.25 34.31
SCNpilot_expt_500_bf_scaffold_26520
Species: Mesorhizobium plurifarium (100%)
2 1353 bp 66.00 3.88 100.22
SCNpilot_expt_500_bf_scaffold_27098
Species: Mesorhizobium sp. SOD10 (50%)
2 1327 bp 65.56 3.01 96.99
SCNpilot_expt_500_bf_scaffold_30291
Species: Hoeflea sp. IMCC20628 (50%)
2 1181 bp 62.32 3.81 76.46
SCNpilot_expt_500_bf_scaffold_24478
Species: Mesorhizobium plurifarium (50%)
2 2121 bp 66.86 3.18 42.72
SCNpilot_expt_500_bf_scaffold_23750
Species: Mesorhizobium amorphae (100%)
2 1503 bp 61.28 5.66 76.25
Displaying items 101-150 of 304 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.