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SCNPILOT_CONT_300_BF_Mesorhizobium_65_39

SCNPILOT_EXPT_500_BF_STEP10_Mesorhizobium_65_3
In projects: SCNPILOT_EXPT_500_BF_STEP10

Consensus taxonomy: Mesorhizobium  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 3.46 Longest contig: 6.89 Kbp Bin length: 461.69 Kbp GC content: 64.92 %
Contigs count: 304 Features count: 683 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 1 / 55 BSCG 2 / 51 ASCG 1 / 38
Displaying items 201-250 of 304 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_38813
Species: Mesorhizobium huakuii (50%)
2 1466 bp 66.03 4.60 92.29
SCNpilot_expt_500_bf_scaffold_31126
Species: Bradyrhizobium elkanii (50%)
2 1141 bp 62.66 3.29 94.92
SCNpilot_expt_500_bf_scaffold_27439
Species: Mesorhizobium sp. LSJC277A00 (50%)
2 1311 bp 58.89 3.05 44.62
SCNpilot_expt_500_bf_scaffold_27954
Species: Mesorhizobium sp. LSJC280B00 (50%)
2 1289 bp 67.34 2.33 66.80
SCNpilot_expt_500_bf_scaffold_25739
Species: Mesorhizobium amorphae (50%)
2 1391 bp 65.28 3.59 95.97
SCNpilot_expt_500_bf_scaffold_29652
Species: Mesorhizobium loti (50%)
2 1210 bp 67.27 3.31 99.67
SCNpilot_expt_500_bf_scaffold_31901
Species: Mesorhizobium sp. SOD10 (50%)
2 1099 bp 66.70 2.96 95.54
SCNpilot_expt_500_bf_scaffold_34026
Species: Mesorhizobium sp. LNHC221B00 (50%)
2 1570 bp 67.39 3.82 100.13
SCNpilot_expt_500_bf_scaffold_20239
Species: Mesorhizobium ciceri (50%)
2 1746 bp 66.61 3.72 98.45
SCNpilot_expt_500_bf_scaffold_21848
Species: Mesorhizobium sp. ORS3359 (50%)
2 1624 bp 64.96 3.39 90.70
SCNpilot_expt_500_bf_scaffold_20499
Species: Mesorhizobium sp. L2C084A000 (50%)
2 1724 bp 67.11 3.34 88.57
SCNpilot_expt_500_bf_scaffold_31396
Species: Mesorhizobium plurifarium (100%)
2 1127 bp 69.65 3.55 85.98
SCNpilot_expt_500_bf_scaffold_31399
Species: Mesorhizobium loti (50%)
2 1127 bp 65.93 3.55 76.13
SCNpilot_expt_500_bf_scaffold_25239
Species: Nocardioides sp. JS614 (50%)
2 1417 bp 67.89 3.88 73.47
SCNpilot_expt_500_bf_scaffold_32786
Species: Mesorhizobium plurifarium (100%)
2 1053 bp 64.29 2.85 96.58
SCNpilot_expt_500_bf_scaffold_32787
Species: Mesorhizobium amorphae (50%)
2 1053 bp 66.29 4.04 93.45
SCNpilot_expt_500_bf_scaffold_15172
Species: Mesorhizobium sp. SOD10 (50%)
2 2320 bp 63.97 2.59 84.96
SCNpilot_expt_500_bf_scaffold_28047
Species: Mesorhizobium amorphae (50%)
2 1284 bp 65.97 2.92 88.55
SCNpilot_expt_500_bf_scaffold_26119
Species: Mesorhizobium plurifarium (50%)
2 2680 bp 64.33 3.36 91.90
SCNpilot_expt_500_bf_scaffold_27465
Species: Mesorhizobium amorphae (50%)
2 1310 bp 65.57 3.24 100.08
SCNpilot_expt_500_bf_scaffold_20771
Species: Mesorhizobium sp. ORS3324 (50%)
2 1703 bp 69.41 3.82 82.80
SCNpilot_expt_500_bf_scaffold_49842
Species: Mesorhizobium plurifarium (50%)
2 1061 bp 66.16 3.30 42.13
SCNpilot_expt_500_bf_scaffold_28308
Species: Mesorhizobium plurifarium (50%)
2 1270 bp 68.82 3.54 92.13
SCNpilot_expt_500_bf_scaffold_37594
Species: Advenella kashmirensis (50%)
2 1467 bp 63.33 3.41 77.71
SCNpilot_expt_500_bf_scaffold_42231
Species: Mesorhizobium sp. L2C084A000 (50%)
2 1180 bp 64.49 2.97 92.54
SCNpilot_expt_500_bf_scaffold_26639
Species: Mesorhizobium loti (50%)
2 1347 bp 67.26 3.34 96.21
SCNpilot_expt_500_bf_scaffold_28312
Species: Mesorhizobium ciceri (50%)
2 1270 bp 58.82 2.95 88.35
SCNpilot_expt_500_bf_scaffold_26641
Species: Salmonella enterica (50%)
2 1347 bp 46.47 3.16 83.96
SCNpilot_expt_500_bf_scaffold_27730
Species: Mesorhizobium sp. LNHC221B00 (50%)
2 1299 bp 67.36 2.31 99.31
SCNpilot_expt_500_bf_scaffold_21363
Species: Mesorhizobium sp. STM 4661 (50%)
2 1660 bp 63.31 4.97 84.22
SCNpilot_expt_500_bf_scaffold_30155
Species: Mesorhizobium sp. LSHC420B00 (100%)
2 1656 bp 68.66 4.38 81.52
SCNpilot_expt_500_bf_scaffold_26132
Species: Candidatus Entotheonella sp. TSY2 (50%)
2 2069 bp 66.80 3.38 99.03
SCNpilot_expt_500_bf_scaffold_31164
Species: Mesorhizobium sp. LNJC405B00 (50%)
2 1139 bp 65.76 3.29 96.93
SCNpilot_expt_500_bf_scaffold_30670
Species: Rhizobium sp. CF080 (100%)
2 1162 bp 60.50 2.37 85.97
SCNpilot_expt_500_bf_scaffold_31422
Species: Mesorhizobium sp. LSHC420B00 (50%)
2 1126 bp 65.90 3.55 78.33
SCNpilot_expt_500_bf_scaffold_24601
Species: Mesorhizobium sp. STM 4661 (50%)
2 1454 bp 64.99 3.27 97.80
SCNpilot_expt_500_bf_scaffold_17473
Species: Mesorhizobium sp. LSHC420B00 (50%)
2 2016 bp 66.52 2.98 90.77
SCNpilot_expt_500_bf_scaffold_21626
Species: Burkholderia sp. MR1 (50%)
2 1641 bp 67.15 2.89 87.93
SCNpilot_expt_500_bf_scaffold_22340
Species: Devosia sp. DDB001 (50%)
2 1590 bp 63.46 3.30 88.11
SCNpilot_expt_500_bf_scaffold_32814
Species: Mesorhizobium plurifarium (50%)
2 1052 bp 65.87 2.85 96.96
SCNpilot_expt_500_bf_scaffold_31177
Species: Mesorhizobium amorphae (50%)
2 1138 bp 63.80 2.86 77.24
SCNpilot_expt_500_bf_scaffold_28332
Species: Mesorhizobium sp. SOD10 (50%)
2 1269 bp 58.71 3.55 78.25
SCNpilot_expt_500_bf_scaffold_32565
Species: Starkeya novella (50%)
2 1063 bp 64.63 3.06 98.21
SCNpilot_expt_500_bf_scaffold_30688
Species: Mesorhizobium opportunistum (50%)
2 1161 bp 65.12 3.01 94.83
SCNpilot_expt_500_bf_scaffold_26153
Species: Mesorhizobium sp. L2C084A000 (50%)
2 1370 bp 69.49 2.92 98.76
SCNpilot_expt_500_bf_scaffold_27754
Species: Mesorhizobium sp. SOD10 (50%)
2 1298 bp 63.56 3.85 88.29
SCNpilot_expt_500_bf_scaffold_50609
Species: Rhizobium etli (50%)
2 1135 bp 65.37 3.52 61.59
SCNpilot_expt_500_bf_scaffold_29967
Species: Ralstonia mannitolilytica (50%)
2 1195 bp 68.28 2.51 94.14
SCNpilot_expt_500_bf_scaffold_33208
Species: Mesorhizobium sp. LSJC264A00 (50%)
2 1033 bp 65.34 4.36 90.03
SCNpilot_expt_500_bf_scaffold_21137
Species: Mesorhizobium ciceri (50%)
2 1675 bp 62.45 2.39 94.03
Displaying items 201-250 of 304 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.