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SCNpilot_expt_500_bf_scaffold_98

Search features with annotation key words

Displaying items 1-30 of 129 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_98_1
unknown

Not on your lists

3..266
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_98_2
unknown

Not on your lists

277..492
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Pseudomonas mendocina RepID=UPI000369B66C
SCNpilot_expt_500_bf_scaffold_98_3
Edwardsiella tarda, Edwardsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

485..2485
DNA (2001bp) protein (667aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002E8E82E rbh
TraN rbh
TraN {ECO:0000313|EMBL:ACY86405.1}; TaxID=498217 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella.;" source="Edwardsiella tarda (strain EIB202).;"
SCNpilot_expt_500_bf_scaffold_98_4
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2497..3180
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDI8_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM44313.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_98_5
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3209..4129
DNA (921bp) protein (307aa)
Uncharacterized protein n=2 Tax=Pseudomonas RepID=U8SCP5_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:EGB97794.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_98_6

Not on your lists

comp(4167..4406)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Pseudomonas stutzeri RepID=UPI000378DF76
Uncharacterized protein {ECO:0000313|EMBL:KKN34565.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_98_7
Moraxella macacae, Moraxella, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4409..5026)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Moraxella macacae 0408225 RepID=L2F500_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ELA08109.1}; TaxID=1230338 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Moraxella.;" source="Moraxella macacae 0408225.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_98_8
Yersinia pseudotuberculosis, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5302..7023)
DNA (1722bp) protein (574aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002E3A21A rbh
putative DNA replication primase rbh
Putative DNA replication primase {ECO:0000313|EMBL:ABS45647.1}; TaxID=349747 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia pseudotuberculosis serotype O:1b (strain IP 31758).;"
SCNpilot_expt_500_bf_scaffold_98_9
unknown

Not on your lists

comp(7026..7163)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_98_10
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7208..9691)
DNA (2484bp) protein (828aa)
DNA topoisomerase (EC:5.99.1.2); K03169 DNA topoisomerase III [EC:5.99.1.2] rbh
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002E590E1 rbh
SCNpilot_expt_500_bf_scaffold_98_11
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9704..10141)
DNA (438bp) protein (146aa)
Uncharacterized protein n=2 Tax=Pseudomonas putida RepID=R9VIR3_PSEPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGN83393.1}; TaxID=1331671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida H8234.;"
SCNpilot_expt_500_bf_scaffold_98_12
Yersinia pseudotuberculosis, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10101..11639)
DNA (1539bp) protein (513aa)
putative DNA topoisomerase; K03168 DNA topoisomerase I [EC:5.99.1.2] rbh
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002EFD495 rbh
Putative DNA topoisomerase {ECO:0000313|EMBL:ABS45717.1}; TaxID=349747 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia pseudotuberculosis serotype O:1b (strain IP 31758).;"
SCNpilot_expt_500_bf_scaffold_98_13
unknown

Not on your lists

comp(11653..12636)
DNA (984bp) protein (328aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_98_14
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12647..15250)
DNA (2604bp) protein (868aa)
hypothetical protein id=12553778 bin=BDI species=Xanthomonas axonopodis genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
Uncharacterized protein {ECO:0000313|EMBL:ETU71845.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
putative antirestriction protein
SCNpilot_expt_500_bf_scaffold_98_15
unknown

Not on your lists

comp(15268..15672)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002EF6657
SCNpilot_expt_500_bf_scaffold_98_16
Yersinia pseudotuberculosis, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15690..16235)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI00036C14B9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS45696.1}; TaxID=349747 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia pseudotuberculosis serotype O:1b (strain IP 31758).;"
SCNpilot_expt_500_bf_scaffold_98_17
unknown

Not on your lists

comp(16345..17100)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002F546E0 rbh
SCNpilot_expt_500_bf_scaffold_98_18
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17107..17571)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI000308AC34
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJA14246.1}; TaxID=1215087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida S12.;"
SCNpilot_expt_500_bf_scaffold_98_19
Yersinia pseudotuberculosis, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17588..18496)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002E676BA rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS45682.1}; TaxID=349747 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia pseudotuberculosis serotype O:1b (strain IP 31758).;"
SCNpilot_expt_500_bf_scaffold_98_20
unknown

Not on your lists

comp(18493..18669)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_98_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18961..19500)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIL1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62509.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_98_22
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19497..20669)
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002E7B1EE rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN81064.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_98_23
unknown

Not on your lists

20859..21074
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI00037296EA
SCNpilot_expt_500_bf_scaffold_98_24
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21071..21280
DNA (210bp) protein (70aa)
hypothetical protein n=2 Tax=Xanthomonas axonopodis RepID=UPI0003719A80
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK72986.1}; TaxID=231023 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida ND6.;"
SCNpilot_expt_500_bf_scaffold_98_25
Pseudomonas sp. BRH_c35, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21420..22901
DNA (1482bp) protein (494aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI00037C97E2 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJS23023.1}; TaxID=1629711 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BRH_c35.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_98_26
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22910..23215
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TUN0_ACIAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM34668.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_expt_500_bf_scaffold_98_27
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23218..23505
DNA (288bp) protein (96aa)
DNA binding protein n=3 Tax=Pseudomonas RepID=B7XGM1_PSEPU
hup; DNA-binding protein HU
DNA binding protein {ECO:0000313|EMBL:BAC41616.1}; TaxID=53412 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas resinovorans.;"
SCNpilot_expt_500_bf_scaffold_98_28
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23574..24275
DNA (702bp) protein (234aa)
hypothetical protein id=12553806 bin=BDI species=unknown genus=Acinetobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP01207.1}; TaxID=509170 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter baumannii (strain SDF).;"
SCNpilot_expt_500_bf_scaffold_98_29
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24302..24634
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Oligella ureolytica RepID=UPI00036F7BE7
Uncharacterized protein {ECO:0000313|EMBL:CEH61318.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_98_30
Pseudomonas sp. HPB0071, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24631..24921
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Pseudomonas luteola RepID=UPI00037D5622
Uncharacterized protein {ECO:0000313|EMBL:ENA27483.1}; TaxID=1203578 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. HPB0071.;"
hypothetical protein
Displaying items 1-30 of 129 in total

View Taxonomy