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SCNpilot_expt_500_bf_scaffold_5433

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5433_1
Capnocytophaga sp. oral taxon 336, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(2..583)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Capnocytophaga sp. oral taxon 336 str. F0502 RepID=S3C022_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EPD99657.1}; TaxID=1203603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. oral taxon 336 str. F0502.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5433_2
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(615..809)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FS11_9SPHI
DNA-binding protein {ECO:0000313|EMBL:KGO11294.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5433_3
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(806..985)
DNA (180bp) protein (60aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI000381E5FC
Uncharacterized protein {ECO:0000313|EMBL:CDT25476.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
SCNpilot_expt_500_bf_scaffold_5433_4
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1039..2112)
DNA (1074bp) protein (358aa)
Phage/plasmid-related protein TIGR03299 n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FS12_9SPHI
Phage/plasmid-related protein TIGR03299 {ECO:0000313|EMBL:EEI94377.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
phage/plasmid-related protein tigr03299
SCNpilot_expt_500_bf_scaffold_5433_5
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2157..2537)
DNA (381bp) protein (127aa)
single-stranded DNA-binding protein n=1 Tax=Empedobacter brevis RepID=UPI0003805F5A
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
single-strand binding protein; K03111 single-strand DNA-binding protein
SCNpilot_expt_500_bf_scaffold_5433_6
CG_Omnitr_04, Omnitrophica, Bacteria

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comp(3445..4329)
DNA (885bp) protein (295aa)
mem:Memar_0433 major facilitator transporter id=1241954 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi rbh
major facilitator transporter
Tax=CG_Omnitr_04
SCNpilot_expt_500_bf_scaffold_5433_7
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4313..4858)
DNA (546bp) protein (182aa)
PaaX-like protein n=1 Tax=Methylomicrobium album BG8 RepID=H8GR34_METAL
PaaX-like protein {ECO:0000313|EMBL:EIC29861.1}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
ChrB domain-containing protein
SCNpilot_expt_500_bf_scaffold_5433_8
unknown

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5036..5203
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5433_9
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5200..6669
DNA (1470bp) protein (490aa)
Resolvase domain n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C9P1_SPHS2 rbh
Resolvase {ECO:0000313|EMBL:AIM38421.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
Resolvase domain rbh
SCNpilot_expt_500_bf_scaffold_5433_10
Fusobacterium mortiferum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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6897..7313
DNA (417bp) protein (139aa)
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EEO36360.1}; TaxID=469616 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium mortiferum ATCC 9817.;"
SCNpilot_expt_500_bf_scaffold_5433_11
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

7324..8868
DNA (1545bp) protein (515aa)
Site-specific recombinase, DNA invertase Pin n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G1E8_ECHVK
site-specific recombinase, DNA invertase Pin
Site-specific recombinase, DNA invertase Pin {ECO:0000313|EMBL:AGA79372.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
SCNpilot_expt_500_bf_scaffold_5433_12
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9048..9497)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G2C3_ECHVK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA79463.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
Displaying 12 items

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