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SCNpilot_expt_500_bf_scaffold_1241

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1241_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..2870
DNA (2868bp) protein (956aa)
Autotransporter beta-domain-containing protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8V2_9SPHN rbh
Autotransporter beta-domain-containing protein {ECO:0000313|EMBL:ENY80113.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
autotransporter beta-domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_1241_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3105..3650
DNA (546bp) protein (182aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VXY6_9SPHN rbh
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:ENY80112.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_bf_scaffold_1241_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3640..4581
DNA (942bp) protein (314aa)
Putative FecR protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9I6_9SPHN rbh
Putative FecR protein {ECO:0000313|EMBL:ENY80111.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative FecR protein; K07165 transmembrane sensor rbh
SCNpilot_expt_500_bf_scaffold_1241_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4584..5600
DNA (1017bp) protein (339aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNU3_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:ENY80110.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_1241_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5997..6866
DNA (870bp) protein (290aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNU3_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:ENY80110.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_1241_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6889..7650)
DNA (762bp) protein (254aa)
Acyl-CoA dehydrogenase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP37_9SPHN rbh
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:ENY80109.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
acyl-CoA dehydrogenase-like protein rbh
SCNpilot_expt_500_bf_scaffold_1241_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7631..8017)
DNA (387bp) protein (129aa)
Acyl-CoA dehydrogenase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP37_9SPHN
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:ENY80109.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
acyl-CoA dehydrogenase-like protein
SCNpilot_expt_500_bf_scaffold_1241_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8129..9322)
DNA (1194bp) protein (398aa)
Acyl-CoA dehydrogenase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8U4_9SPHN rbh
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:ENY80108.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
acyl-CoA dehydrogenase-like protein rbh
SCNpilot_expt_500_bf_scaffold_1241_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9493..10569
DNA (1077bp) protein (359aa)
Ribonuclease Z {ECO:0000313|EMBL:ENY80107.1}; EC=3.1.26.11 {ECO:0000313|EMBL:ENY80107.1};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ribonuclease Z; K00784 ribonuclease Z [EC:3.1.26.11] rbh
Ribonuclease Z n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VXX9_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_1241_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11043..11939)
DNA (897bp) protein (299aa)
Putative PAS/PAC sensor protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBV1_9SPHN rbh
Putative PAS/PAC sensor protein {ECO:0000313|EMBL:ENY81193.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative PAS/PAC sensor protein rbh
SCNpilot_expt_500_bf_scaffold_1241_11
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12034..13257)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU53_SPHAL rbh
Putative membrane protein {ECO:0000313|EMBL:KGB57317.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_1241_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13576..14034)
DNA (459bp) protein (153aa)
TadE-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USC8_9SPHN
TadE-like protein {ECO:0000313|EMBL:ENY81194.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TadE-like protein
SCNpilot_expt_500_bf_scaffold_1241_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14196..15074)
DNA (879bp) protein (293aa)
Putative glutathione S-transferase YghU n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URY1_9SPHN rbh
Putative glutathione S-transferase YghU {ECO:0000313|EMBL:ENY81195.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative glutathione S-transferase YghU; K11209 GST-like protein rbh
SCNpilot_expt_500_bf_scaffold_1241_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15152..16330)
DNA (1179bp) protein (393aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCM0_9SPHN rbh
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ENY81196.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
L-carnitine dehydratase/bile acid-inducible protein F rbh
SCNpilot_expt_500_bf_scaffold_1241_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16471..19707
DNA (3237bp) protein (1079aa)
Amidohydrolase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W173_9SPHN rbh
Amidohydrolase {ECO:0000313|EMBL:ENY81197.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
amidohydrolase rbh
SCNpilot_expt_500_bf_scaffold_1241_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19978..20361
DNA (384bp) protein (128aa)
Hemimethylated DNA-binding region n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBV4_9SPHN
Hemimethylated DNA-binding region {ECO:0000313|EMBL:ENY81198.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hemimethylated DNA-binding region; K11940 heat shock protein HspQ
SCNpilot_expt_500_bf_scaffold_1241_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20395..21279)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USD3_9SPHN rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K09686 antibiotic transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_1241_18
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21802..22044
DNA (243bp) protein (81aa)
GcrA cell cycle regulator n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU61_SPHAL
GcrA cell cycle regulator; K13583 GcrA cell cycle regulator
GcrA cell cycle regulator {ECO:0000313|EMBL:ABF52811.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_1241_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22041..22439
DNA (399bp) protein (133aa)
Phenylacetic acid degradation-related protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCM3_9SPHN
Phenylacetic acid degradation-related protein {ECO:0000313|EMBL:ENY81201.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
phenylacetic acid degradation-related protein
SCNpilot_expt_500_bf_scaffold_1241_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22497..23342)
DNA (846bp) protein (282aa)
Membrane protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W177_9SPHN rbh
Membrane protein {ECO:0000313|EMBL:ENY81202.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
membrane protein rbh
SCNpilot_expt_500_bf_scaffold_1241_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23525..25504
DNA (1980bp) protein (660aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
DNA topoisomerase IV subunit B; K02622 topoisomerase IV subunit B [EC:5.99.1.-] rbh
DNA topoisomerase 4 subunit B n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBV8_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_1241_22
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25587..26108
DNA (522bp) protein (174aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USD5_9SPHN rbh
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:ENY81204.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ECF subfamily RNA polymerase sigma-24 factor
SCNpilot_expt_500_bf_scaffold_1241_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26105..26698
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URZ1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:ENY81205.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1241_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26700..28058
DNA (1359bp) protein (453aa)
Putative beta-lactamase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCM9_9SPHN rbh
Putative beta-lactamase {ECO:0000313|EMBL:ENY81206.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative beta-lactamase rbh
SCNpilot_expt_500_bf_scaffold_1241_25
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28027..28818)
DNA (792bp) protein (264aa)
LysR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W179_9SPHN rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:ENY81207.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_1241_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28815..29216)
DNA (402bp) protein (134aa)
Protein ApaG n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBW2_9SPHN
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
apaG; ApaG protein; K06195 ApaG protein
SCNpilot_expt_500_bf_scaffold_1241_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29234..30439)
DNA (1206bp) protein (402aa)
cystathionine gamma-synthase; K01739 cystathionine gamma-synthase [EC:2.5.1.48] rbh
Cystathionine gamma-synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USE0_9SPHN rbh
Cystathionine gamma-synthase {ECO:0000313|EMBL:ENY81209.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1241_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30446..31492)
DNA (1047bp) protein (349aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
3-isopropylmalate dehydrogenase; K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] rbh
3-isopropylmalate dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URZ5_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_1241_29
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31543..32280)
DNA (738bp) protein (246aa)
DNA repair protein RecO n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCN2_9SPHN rbh
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
recO; DNA repair protein RecO
SCNpilot_expt_500_bf_scaffold_1241_30
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32268..32660)
DNA (393bp) protein (131aa)
Phenylacetic acid degradation-related protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W184_9SPHN
Phenylacetic acid degradation-related protein {ECO:0000313|EMBL:ENY81212.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
phenylacetic acid degradation-related protein
Displaying items 1-30 of 74 in total

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