ggKbase home page

SCNpilot_expt_500_bf_scaffold_1552

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1552_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..636
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGE5_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:ENY82738.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_1552_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

644..1483
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWX5_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:ENY82739.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_1552_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1951..3201)
DNA (1251bp) protein (417aa)
twin-arginine translocation pathway signal; K01271 Xaa-Pro dipeptidase [EC:3.4.13.9] rbh
Twin-arginine translocation pathway signal n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWE7_9SPHN rbh
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ENY82740.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1552_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3212..4417)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH25_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:ENY82741.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_1552_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4414..4980)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5D8_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:ENY82742.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_1552_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5383..6624
DNA (1242bp) protein (414aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
tyrosyl-tRNA synthetase; K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] rbh
Tyrosine--tRNA ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWX9_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_1552_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6701..7042
DNA (342bp) protein (114aa)
Type IV pilus assembly PilZ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWF1_9SPHN
Type IV pilus assembly PilZ {ECO:0000313|EMBL:ENY82745.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
type IV pilus assembly PilZ
SCNpilot_expt_500_bf_scaffold_1552_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7190..9256)
DNA (2067bp) protein (689aa)
DEAD/DEAH box helicase; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] rbh
DEAD/DEAH box helicase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH30_9SPHN rbh
DEAD/DEAH box helicase {ECO:0000313|EMBL:ENY82746.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1552_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9463..9723
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5E2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82747.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K09159 hypothetical protein
SCNpilot_expt_500_bf_scaffold_1552_10
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9705..11960)
DNA (2256bp) protein (752aa)
Putative Transcription-repair-coupling factor n=1 Tax=Streptomyces afghaniensis 772 RepID=S4N1S4_9ACTO
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_500_bf_scaffold_1552_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12273..13166
DNA (894bp) protein (298aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
Transcription-repair-coupling factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGF4_9SPHN
SCNpilot_expt_500_bf_scaffold_1552_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13186..14382)
DNA (1197bp) protein (399aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWY3_9SPHN rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:ENY82749.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
diguanylate cyclase/phosphodiesterase rbh
SCNpilot_expt_500_bf_scaffold_1552_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14557..15450
DNA (894bp) protein (298aa)
Molybdenum cofactor synthesis-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWF4_9SPHN rbh
Molybdenum cofactor synthesis-like protein {ECO:0000313|EMBL:ENY82750.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
molybdenum cofactor synthesis-like protein; K03639 molybdenum cofactor biosynthesis protein rbh
SCNpilot_expt_500_bf_scaffold_1552_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15472..16242
DNA (771bp) protein (257aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ppnK; inorganic polyphosphate/ATP-NAD kinase; K00858 NAD+ kinase [EC:2.7.1.23] rbh
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH32_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_1552_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16303..16749
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5E4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82752.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1552_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16993..17988)
DNA (996bp) protein (332aa)
Transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGF6_9SPHN rbh
Transcriptional regulator {ECO:0000313|EMBL:ENY82753.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1552_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18366..18785
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWF8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82755.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1552_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18782..19453
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH37_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:ENY82756.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1552_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19496..19633
DNA (138bp) protein (46aa)
Transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5E7_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:ENY82757.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Displaying 19 items

View Taxonomy