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SCNpilot_expt_500_bf_scaffold_4128

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4128_1
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1214)
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031B46C7
Exonuclease V subunit alpha {ECO:0000313|EMBL:ESZ88719.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
TrwC protein
SCNpilot_expt_500_bf_scaffold_4128_2
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1214..3034)
DNA (1821bp) protein (607aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000302BFC6 rbh
Type IV secretory protein VirD4 {ECO:0000313|EMBL:ESZ88720.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
Type IV secretory pathway VirD4 components-like protein
SCNpilot_expt_500_bf_scaffold_4128_3
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3031..3405)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030DAA45
Uncharacterized protein {ECO:0000313|EMBL:ESZ88764.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4128_4
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3617..4114)
DNA (498bp) protein (166aa)
UPI0003CFB131 related cluster n=1 Tax=unknown RepID=UPI0003CFB131
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
SCNpilot_expt_500_bf_scaffold_4128_5
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4111..4386)
DNA (276bp) protein (92aa)
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
SCNpilot_expt_500_bf_scaffold_4128_6
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4383..4637)
DNA (255bp) protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:AFW02205.1}; TaxID=1224746 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter oxydans H24.;"
SCNpilot_expt_500_bf_scaffold_4128_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4730..5674)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP80_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80230.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_4128_8
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5948..6184
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A4R0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49738.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4128_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6181..6300
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A4R0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49738.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4128_10
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6306..7556
DNA (1251bp) protein (417aa)
HipA domain-containing protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1] rbh
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZWJ0_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD49739.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_500_bf_scaffold_4128_11
unknown

Not on your lists

7710..8162
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4128_12
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8167..8733
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VGM5_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ71441.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_4128_13
unknown

Not on your lists

8792..9388
DNA (597bp) protein (199aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4128_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9333..10163
DNA (831bp) protein (277aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5G4_9SPHN rbh
hypothetical protein; K07115 rbh
SCNpilot_expt_500_bf_scaffold_4128_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10606..12489)
DNA (1884bp) protein (628aa)
AMP-dependent synthetase/ligase; K01908 propionyl-CoA synthetase [EC:6.2.1.17] rbh
AMP-dependent synthetase/ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH56_9SPHN rbh
AMP-dependent synthetase/ligase {ECO:0000313|EMBL:ENY82781.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_4128_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13203..14807)
DNA (1605bp) protein (535aa)
General substrate transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX06_9SPHN rbh
General substrate transporter {ECO:0000313|EMBL:ENY82779.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
general substrate transporter
SCNpilot_expt_500_bf_scaffold_4128_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14834..16243)
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGH4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:ENY82778.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_4128_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16420..17415
DNA (996bp) protein (332aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
acetyl-coenzyme A synthetase (EC:6.2.1.1); K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetyl-coenzyme A synthetase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5G1_9SPHN
Displaying 18 items

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