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SCNpilot_expt_500_bf_scaffold_2521_13

Organism: SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8

near complete RP 50 / 55 BSCG 50 / 51 ASCG 11 / 38
Location: comp(10556..11050)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNW0_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 164.0
  • Bit_score: 324
  • Evalue 4.80e-86
  • rbh
RNA-binding protein Hfq {ECO:0000256|SAAS:SAAS00067493}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 164.0
  • Bit_score: 324
  • Evalue 6.80e-86
hfq; RNA-binding protein Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 88.9
  • Coverage: 162.0
  • Bit_score: 294
  • Evalue 1.70e-77

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Taxonomy

Sphingopyxis sp. MC1 → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 495
GTGTCCGATAAAAACCAGAATCTTCAGGATCTTTTTCTCAACGCTCTGCGTCGCAGCAAGACCCCGGTGACGATGTTTCTCGTCAAGGGCGTGAAGCTGCAGGGAATAATCACCTGGTTCGACAATTTCTCGCTCTTGCTCCGCCGCGACGGCCAGTCGCAGCTCGTGTACAAGCACGCGATCTCGACGATCATGCCGTCGCATGATTTCGACCTGGCCTCGCTCGGCGCCGATGTGCGCGAAGTTCCCACCGCCAAGGGCAAGGCGCTTCAGGACGTTTTCCTGAATGCGGTGCGCCGTTCCGAAGAGTCGGTGACGATGTTCCTTGTCAACGGCGTCATGCTGCAGGGCGATATCGTCGCCTTCGATCTGTTCTGCATGCTGCTCGAACGCGAACGCCAGGTGCAGCTTGTCTACAAGCACGCCATTTCGACGGTTCAGCCCAACGGCCCGATCAATCTGACCGACAATGGCGAAGCCGACGGCGACGCCTGA
PROTEIN sequence
Length: 165
VSDKNQNLQDLFLNALRRSKTPVTMFLVKGVKLQGIITWFDNFSLLLRRDGQSQLVYKHAISTIMPSHDFDLASLGADVREVPTAKGKALQDVFLNAVRRSEESVTMFLVNGVMLQGDIVAFDLFCMLLERERQVQLVYKHAISTVQPNGPINLTDNGEADGDA*