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SCNpilot_expt_500_bf_scaffold_2521

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2521_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

252..1313
DNA (1062bp) protein (354aa)
Lytic murein transglycosylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNU7_9SPHN rbh
Lytic murein transglycosylase {ECO:0000313|EMBL:ENY80115.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
lytic murein transglycosylase rbh
SCNpilot_expt_500_bf_scaffold_2521_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1400..2254
DNA (855bp) protein (285aa)
Rare lipoprotein A n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9J1_9SPHN rbh
Rare lipoprotein A {ECO:0000313|EMBL:ENY80116.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
rare lipoprotein A; K03642 rare lipoprotein A rbh
SCNpilot_expt_500_bf_scaffold_2521_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2258..3484
DNA (1227bp) protein (409aa)
serine-type D-Ala-D-Ala carboxypeptidase; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] rbh
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VXZ2_9SPHN rbh
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:ENY80117.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2521_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3481..4107
DNA (627bp) protein (209aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9] rbh
Thymidylate kinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8W0_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_2521_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4095..5087
DNA (993bp) protein (331aa)
DNA-directed DNA polymerase; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] rbh
DNA-directed DNA polymerase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP46_9SPHN rbh
DNA-directed DNA polymerase {ECO:0000313|EMBL:ENY80119.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2521_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5126..6694
DNA (1569bp) protein (523aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10] rbh
Methionine--tRNA ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNV2_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_2521_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6694..7470
DNA (777bp) protein (259aa)
TatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] rbh
TatD-related deoxyribonuclease n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9J6_9SPHN rbh
TatD-related deoxyribonuclease {ECO:0000313|EMBL:ENY80121.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2521_8
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7484..8248
DNA (765bp) protein (255aa)
Beta-lactamase-like protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTP7_SPHAL rbh
Beta-lactamase-like protein {ECO:0000313|EMBL:KGB57207.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
beta-lactamase-like protein; K06167 PhnP protein rbh
SCNpilot_expt_500_bf_scaffold_2521_9
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8245..8421
DNA (177bp) protein (59aa)
Uncharacterized protein {ECO:0000313|EMBL:KGB57206.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
SCNpilot_expt_500_bf_scaffold_2521_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8499..9272
DNA (774bp) protein (258aa)
MazG family protein; K04765 ATP diphosphatase [EC:3.6.1.8] rbh
MazG family protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8W7_9SPHN rbh
MazG family protein {ECO:0000313|EMBL:ENY80123.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2521_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9250..10071)
DNA (822bp) protein (274aa)
GTPase HflX n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP53_9SPHN rbh
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
HSR1-like GTP-binding protein; K03665 GTP-binding protein HflX
SCNpilot_expt_500_bf_scaffold_2521_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10068..10547)
DNA (480bp) protein (160aa)
GTPase HflX n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP53_9SPHN
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
HSR1-like GTP-binding protein; K03665 GTP-binding protein HflX
SCNpilot_expt_500_bf_scaffold_2521_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10556..11050)
DNA (495bp) protein (165aa)
RNA-binding protein Hfq n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNW0_9SPHN rbh
RNA-binding protein Hfq {ECO:0000256|SAAS:SAAS00067493}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hfq; RNA-binding protein Hfq; K03666 host factor-I protein
SCNpilot_expt_500_bf_scaffold_2521_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11168..12547)
DNA (1380bp) protein (460aa)
Two component, sigma54 specific, Fis family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9K0_9SPHN rbh
Two component, sigma54 specific, Fis family transcriptional regulator {ECO:0000313|EMBL:ENY80126.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX rbh
SCNpilot_expt_500_bf_scaffold_2521_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12537..13247)
DNA (711bp) protein (237aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
multi-sensor signal transduction histidine kinase; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
Multi-sensor signal transduction histidine kinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VY02_9SPHN
SCNpilot_expt_500_bf_scaffold_2521_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13291..14760)
DNA (1470bp) protein (490aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
multi-sensor signal transduction histidine kinase; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] rbh
Multi-sensor signal transduction histidine kinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VY02_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_2521_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14866..16287)
DNA (1422bp) protein (474aa)
Two component, sigma54 specific, Fis family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8X3_9SPHN rbh
Two component, sigma54 specific, Fis family transcriptional regulator {ECO:0000313|EMBL:ENY80128.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
two component, sigma54 specific, Fis family transcriptional regulator; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG rbh
SCNpilot_expt_500_bf_scaffold_2521_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16284..17387)
DNA (1104bp) protein (368aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
signal transduction histidine kinase, nitrogen specific, NtrB; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] rbh
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP59_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_2521_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17384..17965)
DNA (582bp) protein (194aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
tRNA-dihydrouridine synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNW5_9SPHN
dihydrouridine synthase TIM-barrel protein nifR3
SCNpilot_expt_500_bf_scaffold_2521_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17956..18360)
DNA (405bp) protein (135aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
tRNA-dihydrouridine synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNW5_9SPHN
dihydrouridine synthase TIM-barrel protein nifR3
SCNpilot_expt_500_bf_scaffold_2521_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18589..19599
DNA (1011bp) protein (337aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] rbh
Bifunctional enzyme IspD/IspF n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9K5_9SPHN rbh
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2521_22
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19603..20160
DNA (558bp) protein (186aa)
CinA-like protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTM9_SPHAL rbh
CinA-like protein {ECO:0000313|EMBL:KGB51408.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
CinA-like protein; K03743 rbh
SCNpilot_expt_500_bf_scaffold_2521_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20540..21493)
DNA (954bp) protein (318aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8] rbh
Lipoyl synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP66_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_2521_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21530..22153
DNA (624bp) protein (208aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
carbonate dehydratase; K01673 carbonic anhydrase [EC:4.2.1.1] rbh
Carbonic anhydrase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNX3_9SPHN rbh
Displaying 24 items

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