ggKbase home page

SCNpilot_expt_500_bf_scaffold_459_curated

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_459_curated_1
unknown

Not on your lists

2..229
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_459_curated_2
unknown

Not on your lists

comp(236..661)
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_459_curated_3
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

812..1234
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036FCF6F
Lactoylglutathione lyase {ECO:0000313|EMBL:AIF48827.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
glyoxalase/bleomycin resistance protein/dioxygenase; K07032
SCNpilot_expt_500_bf_scaffold_459_curated_4
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(1297..1578)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Deinococcus apachensis RepID=UPI0003649B80
Uncharacterized protein {ECO:0000313|EMBL:AIE85185.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_459_curated_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

1633..3120
DNA (1488bp) protein (496aa)
Isocitrate dehydrogenase {ECO:0000313|EMBL:CDM66539.1}; EC=1.1.1.42 {ECO:0000313|EMBL:CDM66539.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
isocitrate dehydrogenase; K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CYB3_TRURR
SCNpilot_expt_500_bf_scaffold_459_curated_6
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

Not on your lists

comp(3238..3717)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9EK98_9CYAN
hypothetical protein
Tax=RBG_13_Aminicenantes_63_10_curated
SCNpilot_expt_500_bf_scaffold_459_curated_7
unknown

Not on your lists

3754..4815
DNA (1062bp) protein (354aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_459_curated_8
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4810..7470)
DNA (2661bp) protein (887aa)
phospholipase C, phosphocholine-specific (EC:3.1.4.3); K01114 phospholipase C [EC:3.1.4.3]
Phospholipase C, phosphocholine-specific {ECO:0000313|EMBL:AEI51775.1}; EC=3.1.4.3 {ECO:0000313|EMBL:AEI51775.1};; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
Phospholipase C, phosphocholine-specific n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EQM5_RUNSL
SCNpilot_expt_500_bf_scaffold_459_curated_9
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(7439..8923)
DNA (1485bp) protein (495aa)
Sulfatase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024K7_SOLUE
sulfatase
Sulfatase {ECO:0000313|EMBL:ABJ83569.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_expt_500_bf_scaffold_459_curated_10
GWF1_Spirochaetes_51_8_curated, Spirochaetes, Bacteria

Not on your lists

comp(9007..9432)
DNA (426bp) protein (142aa)
Heat shock protein Hsp20 id=2573458 bin=GWF1_Spirochaetes_51_8 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
heat shock protein Hsp20; K13993 HSP20 family protein
Tax=GWF1_Spirochaetes_51_8_curated
SCNpilot_expt_500_bf_scaffold_459_curated_11
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

9801..10466
DNA (666bp) protein (222aa)
Sensory transduction histidine kinase n=2 Tax=Marinobacter RepID=H8WBP7_MARHY
Multi-sensor signal transduction histidine kinase {ECO:0000313|EMBL:AIE86602.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
PAS/PAC sensor signal transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_459_curated_12
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

10543..11457
DNA (915bp) protein (305aa)
Putative Universal stress protein UspA n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P7T7_9BACT
putative universal stress protein UspA
Universal stress protein {ECO:0000313|EMBL:EMI16512.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
SCNpilot_expt_500_bf_scaffold_459_curated_13
unknown

Not on your lists

11532..12002
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_459_curated_14
unknown

Not on your lists

comp(12045..12248)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_459_curated_15
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(12245..13012)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B34BBC
prepilin-type N-terminal cleavage/methylation domain
Prepilin-type N-terminal cleavage/methylation domain {ECO:0000313|EMBL:CCW34318.1}; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
SCNpilot_expt_500_bf_scaffold_459_curated_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

13257..14861
DNA (1605bp) protein (535aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036BB1D9
Sodium/proton antiporter, CPA1 family (TC 2.A.36) {ECO:0000313|EMBL:CDM66984.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
sodium/hydrogen exchanger
SCNpilot_expt_500_bf_scaffold_459_curated_17
Paenibacillus sp. MAEPY2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14908..15960
DNA (1053bp) protein (351aa)
phosphohydrolase n=1 Tax=Schlesneria paludicola RepID=UPI00029A16AD
Metallophosphoesterase {ECO:0000313|EMBL:KGP85567.1}; TaxID=1395587 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MAEPY2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_459_curated_18
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

comp(15980..16759)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI0003653A10
hypothetical protein
Tax=RBG_16_Zixibacteria_50_21_curated
SCNpilot_expt_500_bf_scaffold_459_curated_19
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16762..17745)
DNA (984bp) protein (328aa)
Alpha/beta hydrolase fold-3 domain protein n=1 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3YWU6_DESAF
alpha/beta hydrolase
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:EGJ51670.1}; TaxID=690850 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio africanus str. Walvis Bay.;"
SCNpilot_expt_500_bf_scaffold_459_curated_20
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

18106..21321
DNA (3216bp) protein (1072aa)
Adenylate/guanylate cyclase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SSM8_9BACT
transcriptional activator
Tax=RBG_16_KB1_OP1_55_9_curated
SCNpilot_expt_500_bf_scaffold_459_curated_21
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(21308..22615)
DNA (1308bp) protein (436aa)
Pdz domain (Also known as dhr or glgf) protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZUQ9_9BACT
Pdz domain (Also known as dhr or glgf) protein {ECO:0000313|EMBL:AIE83649.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
PDZ/DHR/GLGF domain-containing protein; K06889
SCNpilot_expt_500_bf_scaffold_459_curated_22
unknown

Not on your lists

comp(22619..23257)
DNA (639bp) protein (213aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_459_curated_23
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23343..23927)
DNA (585bp) protein (195aa)
Nicotinamidase-like amidase n=1 Tax=Burkholderia sp. BT03 RepID=J2HM43_9BURK
Isochorismatase hydrolase {ECO:0000313|EMBL:EUC17194.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
isochorismatase hydrolase
SCNpilot_expt_500_bf_scaffold_459_curated_24

Not on your lists

24079..24996
DNA (918bp) protein (306aa)
UPI0003D646BE related cluster n=1 Tax=unknown RepID=UPI0003D646BE
Candidate division TM6 bacterium JCVI TM6SC1 contig_3_JCVI_TM6SC1_contig_737665..888636, whole genome shotgun sequence {ECO:0000313|EMBL:KIX85116.1}; TaxID=1306947 species="Bacteria; candidate division TM6.;" source="candidate division TM6 bacterium JCVI TM6SC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_459_curated_25
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

25254..26195
DNA (942bp) protein (314aa)
Transcriptional regulator, LacI family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL29_9BACT
Transcriptional regulator, LacI family {ECO:0000313|EMBL:AIE83741.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
LacI family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_459_curated_26
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

26248..27138
DNA (891bp) protein (297aa)
Prepilin-type N-terminal cleavage/methylation domain n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EXF3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIE83740.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
prepilin-type N-terminal cleavage/methylation domain
SCNpilot_expt_500_bf_scaffold_459_curated_27
unknown

Not on your lists

27143..27307
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_459_curated_28
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(28009..29766)
DNA (1758bp) protein (586aa)
Reverse transcriptase (RNA-dependent DNA polymerase) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIS4_SINAD
reverse transcriptase
Reverse transcriptase (RNA-dependent DNA polymerase) {ECO:0000313|EMBL:AGA28718.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCNpilot_expt_500_bf_scaffold_459_curated_29
unknown

Not on your lists

comp(29750..30646)
DNA (897bp) protein (299aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_459_curated_30
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(30650..31444)
DNA (795bp) protein (265aa)
Putative uncharacterized protein n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BP53_9RICK id=41004 bin=ACD37 species=Candidatus Pelagibacter sp. HTCC7211 genus=Candidatus Pelagibacter taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=ACD37 organism_group=OP11 (Microgenomates) organism_desc=OP11
Tax=RBG_16_Chloroflexi_54_18_curated
Displaying items 1-30 of 39 in total

View Taxonomy