ggKbase home page

SCNpilot_expt_500_bf_scaffold_263_curated

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_263_curated_1
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

116..511
DNA (396bp) protein (132aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE87374.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_263_curated_2
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

581..1402
DNA (822bp) protein (274aa)
Uncharacterized conserved protein n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EW09_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIE87375.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_263_curated_3
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1502..2599
DNA (1098bp) protein (366aa)
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8TCZ9_9GAMM
Oxidoreductase {ECO:0000313|EMBL:KGM57096.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
NADH:flavin oxidoreductase
SCNpilot_expt_500_bf_scaffold_263_curated_4
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

2646..3074
DNA (429bp) protein (143aa)
MerC-like membrane protein n=1 Tax=Colwellia piezophila RepID=UPI00035DF7DD
Uncharacterized protein {ECO:0000313|EMBL:AIE87952.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_263_curated_5
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(3149..4207)
DNA (1059bp) protein (353aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8EI72_9FIRM
SCNpilot_expt_500_bf_scaffold_263_curated_6
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(4283..4570)
DNA (288bp) protein (96aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE87990.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_263_curated_7
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(4567..5112)
DNA (546bp) protein (182aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EZA4_9BACT
RNA polymerase sigma factor sigW {ECO:0000313|EMBL:AIE87989.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
RNA polymerase sigma factor, sigma-70 family
SCNpilot_expt_500_bf_scaffold_263_curated_8
unknown

Not on your lists

comp(5265..5981)
DNA (717bp) protein (239aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_263_curated_9
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(6306..7178)
DNA (873bp) protein (291aa)
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
Branched chain amino acid aminotransferase apoenzyme n=1 Tax=Chthonomonas calidirosea T49 RepID=S0F040_9BACT
Branched chain amino acid aminotransferase apoenzyme {ECO:0000313|EMBL:AIE88045.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_263_curated_10
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

7316..8707
DNA (1392bp) protein (464aa)
VanW family protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TU80_ALKMQ
VanW family protein {ECO:0000313|EMBL:AIE86798.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
VanW family protein
SCNpilot_expt_500_bf_scaffold_263_curated_11
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(8704..10563)
DNA (1860bp) protein (620aa)
Uncharacterized protein n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EVA9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIE88129.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_263_curated_12
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(10589..10987)
DNA (399bp) protein (133aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE88128.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_263_curated_13
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(10965..12206)
DNA (1242bp) protein (414aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE88126.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_263_curated_14
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(12203..13144)
DNA (942bp) protein (314aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE88125.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_263_curated_15
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(13086..14054)
DNA (969bp) protein (323aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE88124.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_263_curated_16
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

14267..14980
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B60161
Uncharacterized protein {ECO:0000313|EMBL:AIE88123.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_263_curated_17
Paenibacillus sp. JDR-2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15005..15625
DNA (621bp) protein (207aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6D3B5_PAESJ
glyoxalase/bleomycin resistance protein/dioxygenase; K07104
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ACT04062.1}; TaxID=324057 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. (strain JDR-2).;"
SCNpilot_expt_500_bf_scaffold_263_curated_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(15646..16554)
DNA (909bp) protein (303aa)
Peptidase S1 and S6 chymotrypsin/Hap n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC99_9BACT
Peptidase S1 and S6 chymotrypsin/Hap {ECO:0000313|EMBL:EDY15929.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
peptidase S1 and S6 chymotrypsin/Hap
SCNpilot_expt_500_bf_scaffold_263_curated_19
unknown

Not on your lists

comp(16636..17187)
DNA (552bp) protein (184aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_263_curated_20
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(17227..18099)
DNA (873bp) protein (291aa)
EamA-like transporter family protein n=1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2IUG3_PSEUL
Permease of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:AIE85130.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
EamA-like transporter family protein
SCNpilot_expt_500_bf_scaffold_263_curated_21
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(18096..18551)
DNA (456bp) protein (152aa)
Transcriptional regulator, AsnC family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WI65_9SYNE
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:AIE85129.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Transcriptional regulator, AsnC family
SCNpilot_expt_500_bf_scaffold_263_curated_22
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

18821..20185
DNA (1365bp) protein (455aa)
hypothetical protein n=1 Tax=Pseudanabaena sp. PCC 6802 RepID=UPI00034772BB
peptidase domain-containing protein
Peptidase domain protein {ECO:0000313|EMBL:ADB15259.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
SCNpilot_expt_500_bf_scaffold_263_curated_23
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(20248..21840)
DNA (1593bp) protein (531aa)
60 kDa chaperonin n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EYC9_9BACT
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
chaperonin GroL
SCNpilot_expt_500_bf_scaffold_263_curated_24
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(21871..22182)
DNA (312bp) protein (104aa)
10 kDa chaperonin n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C6S0_DESTA
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Co-chaperonin GroES
SCNpilot_expt_500_bf_scaffold_263_curated_25
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

22503..23237
DNA (735bp) protein (245aa)
Prepilin-type N-terminal cleavage/methylation domain n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EX09_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIE83760.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
prepilin-type N-terminal cleavage/methylation domain
SCNpilot_expt_500_bf_scaffold_263_curated_26
unknown

Not on your lists

23245..23433
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_263_curated_27
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

23535..24266
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Oceanobacillus kimchii RepID=UPI0003469278
Uncharacterized protein {ECO:0000313|EMBL:AIE87889.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
hypothetical protein; K07090
SCNpilot_expt_500_bf_scaffold_263_curated_28
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

24272..24703
DNA (432bp) protein (144aa)
Putative acetyltransferase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C7E4_9SPHN
Acetyltransferase {ECO:0000313|EMBL:AIE86535.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
putative acetyltransferase
SCNpilot_expt_500_bf_scaffold_263_curated_29
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(24700..24972)
DNA (273bp) protein (91aa)
Methylated-DNA--[protein]-cysteine S-methyltransferase {ECO:0000313|EMBL:AIE86538.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_263_curated_30
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(25082..25501)
DNA (420bp) protein (140aa)
Cell division protein SepF n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EZQ1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIE86540.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
hypothetical protein
Displaying items 1-30 of 66 in total

View Taxonomy